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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G042900.1.p | ||||||||
Common Name | GLYMA_12G042900, LOC100785292 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 101aa MW: 11375.8 Da PI: 9.6761 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.1 | 1.1e-09 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ ++ +W +a+ +g g+++ ++k ++ Glyma.12G042900.1.p 15 SWTPKQNKLFEKALAKYDKDtpdRWQNVAKAVG-GKSADEVKRHY 58 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-5 | 8 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.589 | 11 | 66 | IPR017884 | SANT domain |
SMART | SM00717 | 1.8E-8 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.17E-13 | 14 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-8 | 15 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.92E-7 | 15 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MASSSLSKQK ASDSSWTPKQ NKLFEKALAK YDKDTPDRWQ NVAKAVGGKS ADEVKRHYEI 60 LLEDLRHIES GHVPLPKYKS TGSSTNVEEE ERLLKYLKLN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-33 | 6 | 99 | 1 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G042900.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540679.1 | 7e-68 | protein RADIALIS-like 4 | ||||
Refseq | XP_028194174.1 | 7e-68 | protein RADIALIS-like 4 | ||||
Swissprot | F4JVB8 | 6e-36 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A445HKP9 | 2e-66 | A0A445HKP9_GLYSO; Protein RADIALIS-like 1 | ||||
TrEMBL | K7LSY9 | 2e-66 | K7LSY9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G04680.2 | 3e-67 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 8e-36 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G042900.1.p |
Entrez Gene | 100785292 |
Publications ? help Back to Top | |||
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