PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G042800.1.p | ||||||||
Common Name | GLYMA_12G042800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 405aa MW: 44565 Da PI: 8.057 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.7 | 2.3e-09 | 202 | 249 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Glyma.12G042800.1.p 202 SHSLAERVRREKISERMKYLQDLIPGC----NKVAGKAGMLDEIINYVQSLQ 249 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.06E-16 | 196 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.09E-10 | 196 | 253 | No hit | No description |
PROSITE profile | PS50888 | 15.275 | 198 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-17 | 198 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-6 | 202 | 249 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-10 | 204 | 254 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MLHCLNTSCS DITVLERQRE ATIKCQNHQP PYLTDFNAVF PSSSSSSSSS SSSSHSQGLL 60 MMCSDSSLGQ VLTHSVKPDP GVWPEFGFLP AISRTCSRDG DLVSPKENMA SGKENAKKRK 120 PQNSKVVAEI DNNKDKDKRV KVTGEEGESK VTEHHTRNKN AKSNANKNNR ETSADTSKGS 180 EVQNQKPDYI HVRARRGQAT DSHSLAERVR REKISERMKY LQDLIPGCNK VAGKAGMLDE 240 IINYVQSLQR QVEFLSMKLA AVNPRLDFNI DELFAKEVFP SCAQSFPNIG IPSDMSISNN 300 PSYLQFNSAQ QLVSCCGGLI NSMGISPPNM GLRTNIISTS TVPLPETFLD SSCFAQILPS 360 SNWEGGDFQS LYNVAFDQGR TASFPPQPFT GSYKFVTCQN HFFP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9167 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, and stems. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G042800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098303 | 0.0 | BT098303.1 Soybean clone JCVI-FLGm-23G1 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541034.1 | 0.0 | transcription factor bHLH63 isoform X2 | ||||
Swissprot | Q8GY61 | 7e-55 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | I1LQ29 | 0.0 | I1LQ29_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G04670.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3618 | 34 | 63 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 4e-55 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G042800.1.p |