PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G039100.1.p | ||||||||
Common Name | GLYMA_12G039100, LOC102662493 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 211aa MW: 23370.3 Da PI: 8.5773 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 154.2 | 9.2e-48 | 10 | 138 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93 ++++CqdCGnqakkdC+++RCR CCk++gf+C+th++stW+p+++rr+++ +++++ + ++++kr++++ s+ Glyma.12G039100.1.p 10 KGSKCQDCGNQAKKDCEYSRCRSCCKNKGFNCQTHIRSTWIPVDRRRHQKLEQQQP------LQGDDTPKRHKHN-------PYSS---- 82 5689*******************************************964333332......2245566666653.......1122.... PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +le+ ++P+ +ss+a f+cv+v+s+d +e+aYq++v+igGhvf+G+LydqG+e+ Glyma.12G039100.1.p 83 -----SLEKFKFPAVMSSMASFSCVQVRSIDGTVNEIAYQATVNIGGHVFSGLLYDQGPEQ 138 .....234557************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.7E-44 | 11 | 137 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 8.6E-25 | 13 | 55 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.9E-20 | 88 | 136 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MEAAQEVVVK GSKCQDCGNQ AKKDCEYSRC RSCCKNKGFN CQTHIRSTWI PVDRRRHQKL 60 EQQQPLQGDD TPKRHKHNPY SSSLEKFKFP AVMSSMASFS CVQVRSIDGT VNEIAYQATV 120 NIGGHVFSGL LYDQGPEQSF NAKGGNIGPL DQQQNLNLWS VSIHTTRDGA SATMPPLSAT 180 AAQEPFFPPP HPFPLASFRP DMTYMSHPKP * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G039100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014620120.1 | 1e-159 | protein SHI RELATED SEQUENCE 3 | ||||
Refseq | XP_028192149.1 | 1e-159 | protein SHI RELATED SEQUENCE 3-like | ||||
Swissprot | Q9SJT8 | 5e-42 | SRS3_ARATH; Protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | A0A445HKH5 | 1e-158 | A0A445HKH5_GLYSO; Protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | I1LPZ1 | 1e-158 | I1LPZ1_SOYBN; WBb225L1.6 protein | ||||
STRING | GLYMA12G04310.1 | 1e-159 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 | Representative plant | OGRP1313 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 1e-44 | SHI-related sequence3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G039100.1.p |
Entrez Gene | 102662493 |