PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G037200.1.p
Common NameGLYMA_12G037200, LOC100818604
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 213aa    MW: 23682.9 Da    PI: 7.133
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G037200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.25.9e-07433534
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                          C+ +e+  ++ fC  ++  lC  C  ++H
  Glyma.12G037200.1.p  4 LCDVCESAAAIVFCAADEAALCSACDHKIH 33
                         7***************************99 PP
2zf-B_box25.92.1e-085391337
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                          ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Glyma.12G037200.1.p 53 VPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                         689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-5147IPR000315B-box-type zinc finger
PROSITE profilePS501199.684147IPR000315B-box-type zinc finger
CDDcd000216.70E-5345No hitNo description
PfamPF006434.4E-5334IPR000315B-box-type zinc finger
PROSITE profilePS501198.8735196IPR000315B-box-type zinc finger
SMARTSM003361.1E-105196IPR000315B-box-type zinc finger
PfamPF006433.1E-65385IPR000315B-box-type zinc finger
CDDcd000211.59E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MRTLCDVCES AAAIVFCAAD EAALCSACDH KIHMCNKLAS RHVRVGLADP TDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR VQFPCDKPAQ MEELGLQPMD  120
QNESRRDESQ SLKLKIRDSQ QNHSVSPVPR QENNIDGHGK MDKKLIDLNT RPLRLNGAAP  180
NNQERGMDIL RGNNHKSASV PPVESFKQES EK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.276770.0cotyledon
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G037200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0922060.0BT092206.1 Soybean clone JCVI-FLGm-10I4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540963.11e-157B-box zinc finger protein 18 isoform X2
RefseqXP_028193821.11e-157B-box zinc finger protein 18-like
SwissprotC0SVM52e-79BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A445HKB11e-156A0A445HKB1_GLYSO; B-box zinc finger protein 19 isoform A
TrEMBLK7LSW11e-156K7LSW1_SOYBN; Uncharacterized protein
STRINGGLYMA12G04131.21e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.19e-82DBB family protein