PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G022100.2.p
Common NameGLYMA_12G022100, LOC100800450
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 456aa    MW: 51416.2 Da    PI: 5.7976
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G022100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4523.9e-138284521374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lLl+cA++v++g+le+a+++L+++s laspdgd+mqR+a+yf+e La r++++++++ +al++++ +    s+e+ ++klf+e++P+
  Glyma.12G022100.2.p  28 LIHLLLSCANHVAAGNLENANTTLEQISMLASPDGDTMQRIATYFMESLADRILKTWPGIHRALNSTKMT--LISDEILVQKLFFELFPF 115
                          689*************************************************************999998..69**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          lk++++++NqaI ea+ege+ +HiiD+++ + +QW+aLl+ L++ pegpp+lRiTgv++    +ke l e+++rL++ Ae+l++pf+fn+
  Glyma.12G022100.2.p 116 LKVAFVLTNQAIIEAMEGEKVIHIIDLNAAEAAQWIALLRVLSAHPEGPPHLRITGVHQ----KKEILDEVAHRLTEEAEKLDIPFQFNP 201
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll........................................................ 214
                           va++le+l++++Lrvk+gEala++++lqlh+ll                                                        
  Glyma.12G022100.2.p 202 -VASKLENLDFDKLRVKTGEALAISSILQLHTLLawddeamqrksplllkssngihlqrvlpmgqstlgdllekdmvngytpspdstsss 290
                          .7**************************************************************************************99 PP

                 GRAS 215 ......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                                ++s+    + +++L+++++lsPkv+vv+eq+++hn++++++r+leal+ y+alfd+le++++r+s er  vE++l+g+ei+n++
  Glyma.12G022100.2.p 291 psslttSNSM----NMESFLNALWGLSPKVMVVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMLFGEEIKNII 376
                          8754222222....5578************************************************************************ PP

                 GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          aceg+er+erhe+lekW +r++ aGF++vpls++ + qa++ l+ ++ +gyr+ +e+g+++++W+drp++s+SaWr
  Glyma.12G022100.2.p 377 ACEGSERKERHEKLEKWFQRFDLAGFGNVPLSYFGMVQARRFLQSYGCEGYRMRDENGCVLICWEDRPMYSISAWR 452
                          ***************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.752432IPR005202Transcription factor GRAS
PfamPF035141.3E-13528452IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MMSLSPSLGS PNNLLFREMK SEERGLYLIH LLLSCANHVA AGNLENANTT LEQISMLASP  60
DGDTMQRIAT YFMESLADRI LKTWPGIHRA LNSTKMTLIS DEILVQKLFF ELFPFLKVAF  120
VLTNQAIIEA MEGEKVIHII DLNAAEAAQW IALLRVLSAH PEGPPHLRIT GVHQKKEILD  180
EVAHRLTEEA EKLDIPFQFN PVASKLENLD FDKLRVKTGE ALAISSILQL HTLLAWDDEA  240
MQRKSPLLLK SSNGIHLQRV LPMGQSTLGD LLEKDMVNGY TPSPDSTSSS PSSLTTSNSM  300
NMESFLNALW GLSPKVMVVT EQDCNHNGPT LMDRLLEALY SYAALFDCLE STVSRTSLER  360
LRVEKMLFGE EIKNIIACEG SERKERHEKL EKWFQRFDLA GFGNVPLSYF GMVQARRFLQ  420
SYGCEGYRMR DENGCVLICW EDRPMYSISA WRSRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-42104541381Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.4780.0root| seed coat| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G022100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540398.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLI1LPE10.0I1LPE1_SOYBN; Uncharacterized protein
STRINGGLYMA12G02490.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]