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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.12G017000.1.p |
Common Name | GLYMA_12G017000, LOC547488 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB |
Protein Properties |
Length: 353aa MW: 39518.3 Da PI: 6.0808 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.12G017000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 62.7 | 7.5e-20 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +lvd+++++G g+W++ +++ g++R++k+c++rw +yl
Glyma.12G017000.1.p 15 KGPWTPEEDRILVDYIQKHGHGSWRALPKHAGLNRCGKSCRLRWTNYL 62
79********************************************97 PP
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2 | Myb_DNA-binding | 56.8 | 5.1e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++++eE++l++++++ lG++ W++Ia +++ gRt++++k++w+++l
Glyma.12G017000.1.p 68 RGKFSEEEEQLIINLHAVLGNK-WSAIAGHLP-GRTDNEIKNFWNTHL 113
89********************.*********.************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MMGRTPCSDE NGLKKGPWTP EEDRILVDYI QKHGHGSWRA LPKHAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEEEEQLII NLHAVLGNKW SAIAGHLPGR TDNEIKNFWN THLKKKLLQM 120 GLDPVTHRPR SDHLNLLSNL QQLLAATNIV SNLTNTWDTN NALRLQSDAT QLAKLQLLQN 180 ILHVLGDTTP TSNLDLLNPF GPSSSSLPDG FLNEVLGLNQ SKLQNLYNGY SAQNQPNLQS 240 FEPPHQQQVL PTGNQHMDGG SIDSSCMKPE KGDEQLDVPY SSSTPFNSLP NLVSASPECS 300 THVLMQMENK VMPNECSDPS SSTSTNFEMW GDFMYEEVSD AYWKDLIDKE TN*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB108651 | 0.0 | AB108651.1 Glycine max MYB101 mRNA for transcription factor MYB101, partial cds. |