PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G014700.1.p
Common NameGLYMA_12G014700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRF
Protein Properties Length: 334aa    MW: 36915.6 Da    PI: 6.8371
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G014700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.46.8e-2582126145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Glyma.12G014700.1.p  82 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVES 126
                          79****************************************986 PP
2QLQ63.94.1e-221955137
                  QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                         s+FT +Q+q+L++Q+l++Ky++a++PvPp+L+++iqk
  Glyma.12G014700.1.p 19 SPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQK 55
                         89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.1E-121955IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.0E-162054IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.3952055IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.76282126IPR014977WRC domain
PfamPF088793.0E-2183125IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MNISGGGGTV MGFSSNGRSP FTVSQWQELE HQALIFKYMV AGLPVPPDLV LPIQKSFDST  60
LSHAFFHHPT LSYCSFYGKK VDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGRNRS  120
RKPVESQTMT HSSSTVTSLT VTGGGDSNGT VNFQNLPTNA FGNLQGTDSG TDRTNYHLDS  180
IPYAIPSKEY RCLQGLKSEG GEHCFFSEAS GSNKVLQMES QLENTWPSMS TRVASFSTSK  240
SSTDSLLHSD YPQHSFLSGE YASGEHVKEE GQPLRPFSNE WPKSRESWSG LEDDISNQTA  300
FSTTQLSISI PMSSDFSATS SQSPHGENEI QFR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.619810.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.12G014700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352640.0AC235264.1 Glycine max strain Williams 82 clone GM_WBb0041H18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003540042.10.0growth-regulating factor 4
RefseqXP_028192972.10.0growth-regulating factor 4-like
TrEMBLA0A445HJL60.0A0A445HJL6_GLYSO; Growth-regulating factor 5 isoform A
TrEMBLI1LP390.0I1LP39_SOYBN; Uncharacterized protein
STRINGGLYMA12G01730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47812951
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-50growth-regulating factor 5