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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.12G011500.1.p | ||||||||
Common Name | GLYMA_12G011500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 145aa MW: 16696.3 Da PI: 10.5407 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39.9 | 1.4e-12 | 1 | 57 | 34 | 90 |
FAR1 34 vCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +C+keg+re++ + k++++r+etr+gCka+++v+ ++ w+ tk++ HnHel+ Glyma.12G011500.1.p 1 MCNKEGYREDKGLT-AKKQKRRPETRCGCKARFQVHIVLrSHLWHATKFKDFHNHELQ 57 5*********9999.9999****************9988799**************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-9 | 1 | 57 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MCNKEGYRED KGLTAKKQKR RPETRCGCKA RFQVHIVLRS HLWHATKFKD FHNHELQIGM 60 HSVLVASHRK MDECDIMQMN RLRKAGIDTL DIYNSFASKL GGYLNVQFGK KKNMYNQISR 120 QRRLGGSDGA SAIEFLRVLT LNDL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.12G011500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020205882.1 | 5e-38 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A0R0H9A7 | 1e-104 | A0A0R0H9A7_SOYBN; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 2e-07 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.12G011500.1.p |