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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.12G003200.1.p |
| Common Name | GLYMA_12G003200, LOC100804181 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
NAC |
| Protein Properties |
Length: 357aa MW: 40969.7 Da PI: 7.9467 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.12G003200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.7 | 1.1e-53 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87
+ppGfrFhPtdeel+++yLkkk++ +k+++ +vi+evd++k+ePwdL++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg
Glyma.12G003200.1.p 9 VPPGFRFHPTDEELLHYYLKKKLSFQKFDM-DVIREVDLNKMEPWDLQErcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATG 97
69****************************.99**************963433332556******************************* PP
NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+dk + + + +++g++ktLvfykgrap+g+ktdW+mheyrle
Glyma.12G003200.1.p 98 RDKCIRN-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138
******9.8999****************************85 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048829 | Biological Process | root cap development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MGSSTNGGVP PGFRFHPTDE ELLHYYLKKK LSFQKFDMDV IREVDLNKME PWDLQERCRI 60
GSTPQNEWYF FSHKDRKYPT GSRTNRATNA GFWKATGRDK CIRNSYKKIG MRKTLVFYKG 120
RAPHGQKTDW IMHEYRLEDG NDPQGSANED GWVVCRVFKK KNLFKIVNEG GSTHNPDQQI 180
NNSSNTNARS YRENHYLLHQ QQNPRNSSGL ELDKPELALH YPHLQNPPYS LFQSQPLLQI 240
QKPMVYDYSY TSDTPIMAKQ LMTNPRDCES GSDGLRYQVS ESGMEVGSCE PNQEMGTGRG 300
EGINEWGVLD RLVTSHLGNE DSSKGVRFEE ANPPSVHQIN QLSLRGEMDF WAYGKQ*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 7e-53 | 5 | 162 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 7e-53 | 5 | 162 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 7e-53 | 5 | 162 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 7e-53 | 5 | 162 | 13 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 8e-53 | 5 | 162 | 16 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 7e-53 | 5 | 162 | 13 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 7e-53 | 5 | 162 | 13 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}. |
| Uniprot | TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015039 | 1e-137 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
