PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G253400.1.p
Common NameGLYMA_11G253400, LOC100785257
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 394aa    MW: 45347.2 Da    PI: 8.4326
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G253400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-05137160123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          y+C+ Cg+ F +++ L++H +  H
  Glyma.11G253400.1.p 137 YRCKVCGRKFYTNDKLVNHFKQlH 160
                          9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-6133162No hitNo description
SMARTSM003550.0035137160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.3137165IPR007087Zinc finger, C2H2
PROSITE patternPS000280139160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.10103.6E-7140161IPR029060PIN domain-like
CDDcd061679.38E-15154278No hitNo description
PfamPF019363.7E-8209288IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10103.6E-7212277IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MVSYTSYFIY RRAENPLQIL KFRSIFFFSL EATCWQTYGT LRHCHSGSER GKNQKLTNRV  60
GLFWDLDNKP PNSIPPYEVA NKLRIAASSF GVVRYMVAYA NSHTFSHVPQ GVRESRKEKE  120
LLYRLENKGV IKPNQPYRCK VCGRKFYTND KLVNHFKQLH ESEHTKRMNQ IESARGSRRV  180
KLVAKYSMKM EKYKKAASDI LTPKVGYGLA DELKRAGFWV RTVSDKPQAA DQALQSHIVD  240
IMDHRRVECV VLVSDDSDFV DVINEAKMRC LKTVVIGDID EGFLKRTADT AFSWEEILMG  300
KAKKQAVSVV KNWKDRDILK KLEWTYNPDE DKSNFNLDDT VTEASEDDNI EDTTCDEVDD  360
AYKDDRGSWW ELDSDDDATN RQSGKLSGLS VNR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G253400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537527.10.0uncharacterized protein LOC100785257
TrEMBLK7LRY30.0K7LRY3_SOYBN; Uncharacterized protein
STRINGGLYMA11G36770.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-136C2H2 family protein