 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.11G252300.1.p |
| Common Name | GLYMA_11G252300, LOC100794429 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 244aa MW: 27834.6 Da PI: 6.9267 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.11G252300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 95.4 | 2.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gk ye++s
Glyma.11G252300.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCS 59
79***********************************************96 PP
|
| 2 | K-box | 91.8 | 1.2e-30 | 93 | 177 | 16 | 100 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
s+qqe+ +Lk+++e Lqr+qR+l+GedL++Ls keL++Le+qL++slk+iRs +++++l+q+++lq+ke+ l e n++L ++lee
Glyma.11G252300.1.p 93 SSQQEYLRLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSIRTQFMLDQLSDLQRKEHFLGESNRDLIQRLEE 177
689*****************************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKQYEFCSG 60
SSMLKTLERY QKCNYGAPED NVATNEALVL ELSSQQEYLR LKARYEALQR SQRNLMGEDL 120
GPLSSKELES LERQLDSSLK QIRSIRTQFM LDQLSDLQRK EHFLGESNRD LIQRLEEFQI 180
NPLQLNPSAE EMGHGRYPGQ PQGHALFQPL DCEPTLQIGY HPDPVSVVSE GPSMNNYMAG 240
WLP*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ox0_A | 3e-46 | 75 | 175 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_B | 3e-46 | 75 | 175 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_C | 3e-46 | 75 | 175 | 1 | 101 | Developmental protein SEPALLATA 3 |
| 4ox0_D | 3e-46 | 75 | 175 | 1 | 101 | Developmental protein SEPALLATA 3 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During seed development, highest expression is found in the seed coat of young seeds. Expression decreases steadily during further seed development but is detectable until desiccation begins. {ECO:0000269|PubMed:9869431}. |
| Uniprot | TISSUE SPECIFICITY: Expressed abundantly in the seed coat and to lesser extent in young buds, carpels, petals, and stamen. {ECO:0000269|PubMed:9869431}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000269|PubMed:9869431}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ878424 | 0.0 | AJ878424.1 Glycine max mRNA for MADS transcription factor (mads28 gene). |
