PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G240600.1.p
Common NameGLYMA_11G240600, LOC100809135
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 365aa    MW: 40633.6 Da    PI: 6.0781
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G240600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.13.5e-06161182223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C++C k F+r snL+ H+r H
  Glyma.11G240600.1.p 161 FCEICAKGFRRDSNLRMHMRAH 182
                          6*******************99 PP
2zf-C2H210.70.0017277293521
                          TTTEEESSHHHHHHHHH CS
              zf-C2H2   5 dCgksFsrksnLkrHir 21 
                           Cg++Fsrk+ L  Hi 
  Glyma.11G240600.1.p 277 TCGTTFSRKDKLFGHIA 293
                          6**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.53E-6157184No hitNo description
SMARTSM003550.014160182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.302160187IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-5161184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280162182IPR007087Zinc finger, C2H2
SMARTSM0035560207240IPR015880Zinc finger, C2H2-like
SMARTSM0035554245267IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSNSNSNPTR ILHSQSQDPN TTTADPHVLL QNLSLVRTRM DSLQHFLSQS INTNTPLAVD  60
QIAMVSSQIV SSIHQLIVNG SALVSYSQNS TAASGAPDPP LYPKKPEPEP SVADKAKQIL  120
DSKFGPLEDD DDDDGGAEDF DDGSGIVELD AIEILAEHMH FCEICAKGFR RDSNLRMHMR  180
AHGEQFKTVE ALAKPSETTA QRRATRFSCP FEGCNRNKLH RRFRPLKSVI CVKNHFKRSH  240
CPKMYTCERC RKKHFSVLSD LRSHAKHCGG EARWKCTCGT TFSRKDKLFG HIALFDGHAP  300
ALACDEEGKG KQVVEDDEDP MLMNESEFES DNCLLNQELP EGFFDDFGSI DDYCLKEVLG  360
FPSN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.45180.0cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G240600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352150.0AC235215.1 Glycine max strain Williams 82 clone GM_WBb0020M12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003537566.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLK7LS560.0K7LS56_SOYBN; Uncharacterized protein
STRINGGLYMA11G38080.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.23e-74C2H2 family protein