PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.11G217700.1.p

Common Name

GLYMA_11G217700

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 340aa MW: 37686.5 Da PI: 9.113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G217700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30	9.7e-10	254	295	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq Glyma.11G217700.1.p 254 AKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 295 69*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.41E-11	235	299	No hit	No description
SuperFamily	SSF47459	1.11E-13	244	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.281	245	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-12	246	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	251	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-7	255	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045944	Biological Process	positive regulation of transcription from RNA polymerase II promoter
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0001228	Molecular Function	transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MALAKDQRIP RDSSMSSKVQ NCVFSETSVE VTSMTVHRVN EYHKSVLEDQ EDGSPTTNGL 60 SNDSAITHSP PLCGSVKGYA YKGTNYQLEE AEPLINFKGY SNLMQGGGSL LSFQQNKMVP 120 NNCYMKENGQ KEVCVWENNL HQGRDHWNQT SPRNTRDMRL VENANCFQTS SGYISIVNNA 180 KEKQHGQSSS GLLYPAPTIP NASSLHKLGA QESVLQKRPF MGESMKAAKK QCSIESKTTK 240 HNSSPSKDPQ SVAAKNRRER ISERLKILQE LVPNGSKVDL VTMLEKAISY VKFLQLQVKV 300 LATDEFWPVQ GGKPPDISQV KEVIDTILSS QKERSSSSK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G217700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025980080.1	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	1e-56	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	I1LME2	0.0	I1LME2_SOYBN; Uncharacterized protein
STRING	GLYMA11G33840.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53
Representative plant	OGRP3532	13	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	8e-57	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Glyma.11G217700.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]