PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G214300.2.p
Common NameGLYMA_11G214300, LOC100815016
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 250aa    MW: 27671.7 Da    PI: 6.3691
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G214300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038107129123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C++ F ++  L  H++ H
  Glyma.11G214300.2.p 107 FSCNYCKRKFFSSQALGGHQNAH 129
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.9E-6104134No hitNo description
PROSITE profilePS5015711.323107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKQHFDLEVV ASEEYESEVS SLVTSNISIQ ETYAGPCSDN LTKFFNVTNP IELHLHSDSI  60
SLDLTLKFNN NDLVVRNSAG ISFSSTSESS INDPPSQTNP ANNPRVFSCN YCKRKFFSSQ  120
ALGGHQNAHK RERTIAKRAM RMGIFSERYE SLASLPFNGS FRSLGIKAHS SLHHGFVPTT  180
KSSARFEQGY VGLPIFLEED EEELLWQGSY HQVPSEGGHT HQNFSLSGSS ILSFVGENAN  240
HPPELTLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G214300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-177AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006591323.10.0zinc finger protein 4
RefseqXP_006591324.10.0zinc finger protein 4
RefseqXP_014619692.10.0zinc finger protein 4
TrEMBLI1LMA00.0I1LMA0_SOYBN; Uncharacterized protein
STRINGGLYMA11G33420.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.16e-39zinc finger protein 4