PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G212400.1.p
Common NameGLYMA_11G212400, LOC100808596
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 673aa    MW: 75877.3 Da    PI: 5.3259
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G212400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.54.4e-5681351128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtdeelv++yLk+k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgk
  Glyma.11G212400.1.p   8 LPPGFRFHPTDEELVSYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGK 96 
                          79****************************.99***************6434445667******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v s +++++g+kktLv+y+grap+g +t Wvmheyrl
  Glyma.11G212400.1.p  97 DRKVNS-QSRAIGMKKTLVYYRGRAPHGCRTGWVMHEYRL 135
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-654158IPR003441NAC domain
PROSITE profilePS5100561.8358158IPR003441NAC domain
PfamPF023653.0E-309135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MNMAPVSLPP GFRFHPTDEE LVSYYLKRKI NGRKIELEII PEVDLYKCEP WDLPGKSLLP  60
GKDLEWYFFS PRDRKYPNGS RTNRATKSGY WKATGKDRKV NSQSRAIGMK KTLVYYRGRA  120
PHGCRTGWVM HEYRLDETQC ETNSGLQDAY ALCRVFKKTA VIPPKVGDQH YVNVLSHANQ  180
MTSDQSSSID IELYSEGRGE VLESSNYLMP WDTCPSPNIN IGSSLNININ GGTKRDNNNN  240
NIGTWSHFLS SEDLLNLPTS TSSFPNYGSM SYPPSKVDIA LECARMQHRF TMPPLEVQQD  300
FPQVGISELK MAQASASNMC GGSRNNETDI LQEILSVAHA SQELINQSNY SSSQAFGANE  360
NNYAPPHESD FTFMVGTNYN HVNDMNTMGF VDNIAWEDPN ARSIEIGDLD DGFKTERMVE  420
NLRWVGMSSK NMEKGFMEEQ KIVPIEHISN FQANREENEV QVVSEQHNSN KELNDTDIDD  480
FSMGFINTDD PNENFIDEGN IDYSNSTNFE VVEETKVSHG MFVSTRQVAD TFFHQIAPSQ  540
TVKVQLNPVL AENQSIENAV VMVNQGHSFF RKFRAYVMGK LIKPSNTIAS ALVFIFALLL  600
VHCVCLKEQV GEDLKPDPKC FDGANTMKKM RQLPAENNII WNEQENFWSV GIKCGKGFGV  660
VLKKIGIFLT IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-57316015170NAC domain-containing protein 19
3swm_B1e-57316015170NAC domain-containing protein 19
3swm_C1e-57316015170NAC domain-containing protein 19
3swm_D1e-57316015170NAC domain-containing protein 19
3swp_A1e-57316015170NAC domain-containing protein 19
3swp_B1e-57316015170NAC domain-containing protein 19
3swp_C1e-57316015170NAC domain-containing protein 19
3swp_D1e-57316015170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G212400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619690.10.0NAC domain-containing protein 86 isoform X1
TrEMBLA0A0R0HU900.0A0A0R0HU90_SOYBN; Uncharacterized protein
STRINGGLYMA11G33210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Representative plantOGRP87171015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-161NAC domain containing protein 28