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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G211900.2.p | ||||||||
Common Name | GLYMA_11G211900, LOC100784593 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | VOZ | ||||||||
Protein Properties | Length: 427aa MW: 47638.2 Da PI: 6.1444 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 436.6 | 3.3e-134 | 193 | 410 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspw 90 pppsaflgpkcalwdc+rp+qg +w+qdycssfha+lalneg+pg+tpvlrp+gi+lkd+llfaalsak+qgk vgipecegaatakspw Glyma.11G211900.2.p 193 PPPSAFLGPKCALWDCPRPVQGLDWCQDYCSSFHAALALNEGPPGMTPVLRPGGIGLKDNLLFAALSAKAQGKVVGIPECEGAATAKSPW 282 89**************************************************************************************** PP VOZ 91 naaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldal 180 na+elfd+++legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvm+efgglkrsyymdpqp++ fewhlyeyei+++d + Glyma.11G211900.2.p 283 NAPELFDICVLEGETIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNLFEWHLYEYEISKCDVC 372 ****************************************************************************************** PP VOZ 181 alyrlelklvdekksakgk.vskdsladlqkklgrlta 217 alyrlelklvd+kks+k+k v+ ds+adlqk++g+l+a Glyma.11G211900.2.p 373 ALYRLELKLVDGKKSSKAKiVTGDSVADLQKHMGSLSA 410 *******************5578************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MKKISKSSCK LASHRLFKDK ARNHVDDLQV MFLDLQFARK ESRTIDAALL EEQVHQMLRE 60 WKAELNEPSP ASSLQQGGSL GSFSTDVYRL LQLCEEEDDA TSPLVAPKPE PNDQIMQAGA 120 KVIVQEGQHQ QELLLLKECK PFTVGFPNLD GTALEYHQFD INKDMDDSFY AGTGFCEEGR 180 VPHISSYLPS VCPPPSAFLG PKCALWDCPR PVQGLDWCQD YCSSFHAALA LNEGPPGMTP 240 VLRPGGIGLK DNLLFAALSA KAQGKVVGIP ECEGAATAKS PWNAPELFDI CVLEGETIRE 300 WLFFDKPRRA FESGNRKQRS LPDYSGRGWH ESRKQVMNEF GGLKRSYYMD PQPLNLFEWH 360 LYEYEISKCD VCALYRLELK LVDGKKSSKA KIVTGDSVAD LQKHMGSLSA KGTRQGDFLS 420 LSRHCE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.42219 | 0.0 | meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G211900.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-157 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006594203.1 | 0.0 | transcription factor VOZ1 isoform X2 | ||||
Refseq | XP_028195786.1 | 0.0 | transcription factor VOZ1-like isoform X2 | ||||
Swissprot | Q9SGQ0 | 0.0 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A445HG88 | 0.0 | A0A445HG88_GLYSO; Transcription factor VOZ1 isoform C | ||||
TrEMBL | K7LZW9 | 0.0 | K7LZW9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G21720.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 0.0 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G211900.2.p |
Entrez Gene | 100784593 |
Publications ? help Back to Top | |||
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