PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G196300.3.p
Common NameGLYMA_11G196300, LOC100810379
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 769aa    MW: 85734.1 Da    PI: 7.2435
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G196300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-095585951954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  Glyma.11G196300.3.p 558 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 595
                          665559******************************87 PP
2BELL104.38.1e-34413483272
                 BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          r e qk kakLl ++eeV +rYkqy++q+q+v+ sFe vagl  a+pY+slAlk +S+hFrcLk+ai++q+
  Glyma.11G196300.3.p 413 RPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSLATPYVSLALKSVSKHFRCLKNAISDQL 483
                          5689****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.4E-35299481IPR006563POX domain
PfamPF075268.1E-42304480IPR006563POX domain
PROSITE profilePS5007111.985536599IPR001356Homeobox domain
CDDcd000866.50E-11539600No hitNo description
SMARTSM003892.4E-8539603IPR001356Homeobox domain
SuperFamilySSF466897.7E-17541605IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27542603IPR009057Homeodomain-like
PfamPF059203.6E-18556595IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MSSLRPELHV AQQLRRDKLR IQNSSQQQHL QEFPNNLEQL SLQPGFNLDL LQVRSVRNGN  60
MLDEALYSSE MITFPNPLSA PRNPLECQEL MMVQYGSTSF PHSSSPKEQQ CEPRNLGASW  120
MLNCNNSSSS NNNNSNNSLY SSELNNNVSS EMANREIQKQ FGEMQYPPSS SSSSPIYHNA  180
LQDMAYGVWG GNNHHGESVL HYGNNELRIG GANLWTHNNN NIPLGFKKIN NDEQLHDRNH  240
THQGLSLSLS SNSQQQQSKP CFDEGSVVKS PSSTMKLNAL SNNNNNTVYR NVGPLGPFTG  300
YATILKSSRF LRPCQQLLDE WCCQSGSKFA KRGICDVPEW VSRDVSSAST CATALNVDES  360
AAKGGGNSGA SSSVLYCSIE NNNNNNNNNN NNNNNNNNSA DGGAASSFCL SSRPECQKNK  420
AKLLYMQEEV TRRYKQYHQQ MQMVVQSFES VAGLSLATPY VSLALKSVSK HFRCLKNAIS  480
DQLKLTCEVL GEDFSIPTTS TGSKFDNNMA RLRCMDQSFQ KNKSGGANIN FLEPQQHVWR  540
PQRGLPERSV AILKAWLFEH FLHPYPTDTD KHMLATQTGL SRNQVSNWFI NARVRVWKPM  600
VEEIHMLETK GVTTEARQHH QTSSKNDQLA SASEGSNNQP KSDNQPAHRF GGAHASHSHA  660
IPEKQFQCLE MGSSSSACNE EQIGMEEDQW NQEKRSKLDC QITTTTPSMD GTVMGFMPYR  720
RSGLEGLGSV SLTLGLRHGV EGVQQQQLQQ EEELRRQFGG HMIYDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A9e-15545603563Homeobox protein Meis2
3k2a_B9e-15545603563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.225030.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G196300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-131AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006591130.10.0BEL1-like homeodomain protein 8
TrEMBLK7LQD50.0K7LQD5_SOYBN; Uncharacterized protein
STRINGGLYMA11G20240.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.32e-67BEL1-like homeodomain 4