PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G196300.1.p | ||||||||
Common Name | GLYMA_11G196300, LOC100810379 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 769aa MW: 85734.1 Da PI: 7.2435 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.8 | 2.1e-09 | 558 | 595 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + Glyma.11G196300.1.p 558 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 595 665559******************************87 PP | |||||||
2 | BELL | 104.3 | 8.1e-34 | 413 | 483 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e qk kakLl ++eeV +rYkqy++q+q+v+ sFe vagl a+pY+slAlk +S+hFrcLk+ai++q+ Glyma.11G196300.1.p 413 RPECQKNKAKLLYMQEEVTRRYKQYHQQMQMVVQSFESVAGLSLATPYVSLALKSVSKHFRCLKNAISDQL 483 5689****************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 7.4E-35 | 299 | 481 | IPR006563 | POX domain |
Pfam | PF07526 | 8.1E-42 | 304 | 480 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.985 | 536 | 599 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.50E-11 | 539 | 600 | No hit | No description |
SMART | SM00389 | 2.4E-8 | 539 | 603 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 7.7E-17 | 541 | 605 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-27 | 542 | 603 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.6E-18 | 556 | 595 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 769 aa Download sequence Send to blast |
MSSLRPELHV AQQLRRDKLR IQNSSQQQHL QEFPNNLEQL SLQPGFNLDL LQVRSVRNGN 60 MLDEALYSSE MITFPNPLSA PRNPLECQEL MMVQYGSTSF PHSSSPKEQQ CEPRNLGASW 120 MLNCNNSSSS NNNNSNNSLY SSELNNNVSS EMANREIQKQ FGEMQYPPSS SSSSPIYHNA 180 LQDMAYGVWG GNNHHGESVL HYGNNELRIG GANLWTHNNN NIPLGFKKIN NDEQLHDRNH 240 THQGLSLSLS SNSQQQQSKP CFDEGSVVKS PSSTMKLNAL SNNNNNTVYR NVGPLGPFTG 300 YATILKSSRF LRPCQQLLDE WCCQSGSKFA KRGICDVPEW VSRDVSSAST CATALNVDES 360 AAKGGGNSGA SSSVLYCSIE NNNNNNNNNN NNNNNNNNSA DGGAASSFCL SSRPECQKNK 420 AKLLYMQEEV TRRYKQYHQQ MQMVVQSFES VAGLSLATPY VSLALKSVSK HFRCLKNAIS 480 DQLKLTCEVL GEDFSIPTTS TGSKFDNNMA RLRCMDQSFQ KNKSGGANIN FLEPQQHVWR 540 PQRGLPERSV AILKAWLFEH FLHPYPTDTD KHMLATQTGL SRNQVSNWFI NARVRVWKPM 600 VEEIHMLETK GVTTEARQHH QTSSKNDQLA SASEGSNNQP KSDNQPAHRF GGAHASHSHA 660 IPEKQFQCLE MGSSSSACNE EQIGMEEDQW NQEKRSKLDC QITTTTPSMD GTVMGFMPYR 720 RSGLEGLGSV SLTLGLRHGV EGVQQQQLQQ EEELRRQFGG HMIYDFVG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 9e-15 | 545 | 603 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 9e-15 | 545 | 603 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22503 | 0.0 | hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G196300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 1e-131 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006591130.1 | 0.0 | BEL1-like homeodomain protein 8 | ||||
TrEMBL | K7LQD5 | 0.0 | K7LQD5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G20240.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3481 | 32 | 57 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 2e-67 | BEL1-like homeodomain 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G196300.1.p |
Entrez Gene | 100810379 |