PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 237aa MW: 25969.1 Da PI: 5.3365

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G188200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.9	1.8e-16	63	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ ++Wv+eIr+p + r+++g++ t+e+Aa+a++ a ++l g Glyma.11G188200.1.p 63 PVYRGVRQRN-GNKWVCEIREPI----KkSRVWVGTYPTPEMAARAHDVAVLALSG 113 68***999.9*****72....35*******************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.5E-12	63	111	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.758	64	121	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.37E-19	64	123	IPR016177	DNA-binding domain
SMART	SM00380	8.5E-26	64	127	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-28	64	123	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-7	65	76	IPR001471	AP2/ERF domain
CDD	cd00018	1.74E-27	65	123	No hit	No description
PRINTS	PR00367	3.0E-7	87	103	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MEFEIINESP ADSTSLSSSS VSPCTPPNPN LLCDSPNPQP NTNTNPSHKR KAGRKKFRET 60 RHPVYRGVRQ RNGNKWVCEI REPIKKSRVW VGTYPTPEMA ARAHDVAVLA LSGTSAKFNF 120 PDSVSLLPLA KSHSAVDIRE AAKAASIEAF IPNTAFSSSH NNSNFGENGN AEDTCLNIGM 180 HDDESETMFF DEEAVYNMPG LLDSMAEGLL ITPPSMKRAM DWDDIGCVID LTLWTN*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269\|PubMed:17136305}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269\|PubMed:17136305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G188200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269\|PubMed:17136305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003539179.1	1e-177	dehydration-responsive element-binding protein 1F
Swissprot	A2WZI4	2e-52	DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
Swissprot	Q8S9Z5	2e-52	DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBL	K7LQ79	1e-175	K7LQ79_SOYBN; Uncharacterized protein
STRING	GLYMA11G19341.1	1e-176	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF243	33	224
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25490.1	7e-51	C-repeat/DRE binding factor 1

Link Out ? help Back to Top
Phytozome	Glyma.11G188200.1.p
Entrez Gene	100793751

Publications ? help Back to Top
Wang Q, et al. Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice. Plant Mol. Biol., 2008. 67(6): p. 589-602 [PMID:18470484] Liu HH,Wang YG,Wang SP,Li HJ Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses. Genet. Mol. Res., 2015. 14(1): p. 2331-40 [PMID:25867379]