PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 331aa MW: 37895.8 Da PI: 7.9558

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G184000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	165	184	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Glyma.11G184000.1.p 165 FACSICSKTFNRYNNMQMHM 184 78*****************9 PP
2	zf-C2H2	16.1	3.2e-05	249	271	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Glyma.11G184000.1.p 249 FMCRKCGKTFAVKGDWRTHEKNC 271 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.36E-5	156	188	No hit	No description
PROSITE profile	PS50157	10.45	165	192	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.3E-5	165	184	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.17	165	187	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.3E-4	165	184	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	167	187	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	212	244	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.66E-6	235	269	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.6E-6	245	269	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	35	249	269	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.704	249	269	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.912	269	302	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGLMECNVED NKNLYLHAPT FIEWLKPCSS PNYSYLNNSN TILSSSSSPS SSFSFTHNQF 60 VQETIQFLPI LSEKKASKDE EDQTFDEVKE EKVKQVTVAL HIGLPDTSKG HADDEVVDEK 120 MIFHVKEEEE ESSKRSFHGC SFNNNQERRF WIPTPAQILV GPMQFACSIC SKTFNRYNNM 180 QMHMWGHGSE FRKGPDSLKG SQPAAMLRLP CYCCAQGCKN NINHPRAKPL KDFRTLQTHY 240 KRKHGTKPFM CRKCGKTFAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIRSFGKGH 300 KPHPPFEAFE DEKECITTGS DEDEVNAHHT *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.36624	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G184000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095932	0.0	BT095932.1 Soybean clone JCVI-FLGm-20I11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003538121.1	0.0	zinc finger protein WIP3
Swissprot	Q9SGD1	1e-123	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	I1LKS6	0.0	I1LKS6_SOYBN; Uncharacterized protein
STRING	GLYMA11G19060.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-117	WIP domain protein 3

Link Out ? help Back to Top
Phytozome	Glyma.11G184000.1.p
Entrez Gene	100788451

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]