PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G147200.1.p
Common NameGLYMA_11G147200, LOC100816103
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 891aa    MW: 96780.6 Da    PI: 5.3468
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G147200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.6e-076693127
                         --S---SGGGGTS.--TTTTT-SS-SSS CS
              zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaHgp 27
                         +kt+lC++f+     C++G+ C++aHg+
  Glyma.11G147200.1.p 66 WKTSLCSYFRSHNgSCSHGGACRYAHGE 93
                         8******7776658************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.6E-126297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-66398IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3246594IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-56593IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-56693IPR000571Zinc finger, CCCH-type
CDDcd005905.24E-6156221No hitNo description
SuperFamilySSF549287.16E-6159231IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.6E-6159221IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168742.503273890IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533351.28E-45275301IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.28E-45333436IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1502.7E-64526627IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.28E-45527627IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.9E-9571629IPR025714Methyltransferase domain
CDDcd024402.37E-6573627No hitNo description
PfamPF059588.3E-9772825IPR010280(Uracil-5)-methyltransferase family
Gene3DG3DSA:3.40.50.1502.7E-64774829IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.28E-45777839IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PROSITE patternPS012300785817IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1502.7E-64865890IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533351.28E-45874890IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MTEPLSNTEL SSSKTLDPTN RHDSTSEPHQ TAPEEVELNR EDDVVPTAKR KRNDGVVEDR  60
LLHPLWKTSL CSYFRSHNGS CSHGGACRYA HGEEELRLRP DNTWDPTSER AKKALKTESD  120
DKRAVSEEVM MTEAVVDDGD ADGDDGCGAN HALSKCLVHL PRKWSSENFR TFLSEQGIAF  180
KHAKKKKGMM IGFVTFEDEE QLKSSTKELE GKSIGNKTVK VADVLPRSFE KKSNASVASH  240
QELDEGVDVA SSGTLDGETN NDNLAKTRNV RDAVTPLAHM AYADQLEQKK SALMLILKKL  300
TRNARKACPN GVSLPEWILK SREIGGLPCK LEGIIASPIV NGYRNKCEFS VGYSLGGKVT  360
VGFMLGNFRE GVTAVEEAVD CPNVSTIACK YATIFQEFLQ DSDLPVWNRF KNTGFWRQLT  420
VREGRTNGNA VDAETFGGIA EVMLIVQVST ASFDDAKVAA EFKRLAQAFV VGATSHCSTL  480
PLTALVVQDH QGISNVAPAD APLHLLPIPK AAGDSEVDEN NNAKDVRIHD YVNNLQFSIS  540
PTAFFQVNTL AAEKLYSLAG DWACLGPDTL LFDICCGTGT IGLTLAHRVG MVIGIEMNAS  600
AVSDAHRNAE INGIKNIKFI CSKAEDVMGS LLREHLNVTK EQVDDPNISG KGNDSPEDSA  660
CPEPENGELA SHCPENNNAE VGSEVQKGST CEQADGISEQ AEDVMGSLLR DDANMPKEQS  720
DYPNISGSGN DIPEDSTFPV PENGETTSHS ESNNAEVGGE VQKGSTSRNG KTSLQQFKNV  780
VAIVDPPRAG LHPTVIKALR THPGLRRLVY ISCNPETLVA NAIELCTPSP LKIEKGNKDN  840
RGWRNMSSAG LARHRAKSMP ISEAFHPVKA MAVDLFPHTP HCELVMLLER *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A4e-1831264686383Uncharacterized RNA methyltransferase SP_1029
5xj2_A4e-1831264686383Uncharacterized RNA methyltransferase SP_1029
5xj2_B4e-1831264686383Uncharacterized RNA methyltransferase SP_1029
5xj2_C4e-1831264686383Uncharacterized RNA methyltransferase SP_1029
5xj2_D4e-1831264686383Uncharacterized RNA methyltransferase SP_1029
5zq1_A4e-1831264686383Uncharacterized RNA methyltransferase SP_1029
5zq8_A4e-1831264686383Uncharacterized RNA methyltransferase SP_1029
5zq8_B4e-1831264686383Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.197610.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G147200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006591143.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLK7LQG40.0K7LQG4_SOYBN; Uncharacterized protein
STRINGGLYMA11G20660.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88541720
Representative plantOGRP60881112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.20.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]