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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.11G145500.1.p |
Common Name | GLYMA_11G145500, LOC100810558 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
ARF |
Protein Properties |
Length: 698aa MW: 76556 Da PI: 7.8202 |
Description |
ARF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.11G145500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 77.1 | 1.9e-24 | 109 | 210 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD+vvF
Glyma.11G145500.1.p 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldctAEPPVQ--TVVAKDVHGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFL 196
89****************************997556555..8************************************************ PP
E-SSSEE..EEEEE-S CS
B3 84 ldgrsefelvvkvfrk 99
+ +++ l+v+++r+
Glyma.11G145500.1.p 197 --RAENGDLCVGIRRA 210
..4488999****997 PP
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2 | Auxin_resp | 111.2 | 1.1e-36 | 272 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83
a++ a+++++FevvY+Prast+eF+vk+++v +a++++++ GmRfkmafeted+ ++++ +Gt+++v+ +dp+ WpnS+Wr+L+
Glyma.11G145500.1.p 272 AVTLAASNKAFEVVYYPRASTPEFCVKASSVGAAMRIQWCSGMRFKMAFETEDATRISWfMGTIASVQVVDPICWPNSPWRLLQ 355
6788999***************************************************************************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 698 aa
Download sequence Send
to blast |
MKEGEKVLDP QLWHACAGGM VQMPQVHSKV FYFPQGHAEH AHTTIDLRVP PFILCNVEAV 60 KFMADPETDQ VFAKLSLVPL RNSELGPDSD SAAGDDAAEP SSCEKPASFA KTLTQSDANN 120 GGGFSVPRYC AETIFPRLDC TAEPPVQTVV AKDVHGETWR FRHIYRGTPR RHLLTTGWSS 180 FVNQKKLVAG DSVVFLRAEN GDLCVGIRRA KKGIDEGSGL ASSSVWSSAS GSGIGPFSFF 240 LKEENKMLRN GCGVGGNLSG RVKVRAEDVV EAVTLAASNK AFEVVYYPRA STPEFCVKAS 300 SVGAAMRIQW CSGMRFKMAF ETEDATRISW FMGTIASVQV VDPICWPNSP WRLLQVTWDE 360 PDLLQNVKRV SPWLVELVSN IPLINFTPFS PPRKKLRPQH PDFPLDVQFP IPMLSGNQHG 420 PNSPLCGFSD NAPAGIQGAR HAQFGKSLSD LHLNNNKLQL GMLPTNIHQL GGVYTGISSG 480 NMMTKHDKSK ESLSCFLTMG KSSKSLEKSD DVKKHQFLLF GQPILTEQQI SSCSRDVLSR 540 GKRSLGDEKD KAKCVLDDSQ STLSQQFSPG KASSAEFFWQ LGLDTGHCKV FLESEDVGRT 600 LDLSQFGSYE ELYRRLGNMF GIERSEILNH VLYYDAAGAV KQTGEEPFSD FMKTAKRLTI 660 LTDSGSKNIK RAFITGTRNG EHGLDPSNKT GPLSIFA*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help
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Source |
Description |
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |