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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G142900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 195aa MW: 22151.5 Da PI: 4.7932 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.5 | 6.4e-13 | 2 | 34 | 14 | 48 |
HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 d++ ++G++ W++Iar+++ gRt++++k++w++++ Glyma.11G142900.2.p 2 DLHSKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 34 899******.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.549 | 1 | 38 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-15 | 2 | 35 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.4E-9 | 2 | 40 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-10 | 2 | 33 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 0.0055 | 2 | 36 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.79E-8 | 2 | 34 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDLHSKWGNR WSRIARRLPG RTDNEIKNYW RTHMRKKKAQ EKKHASAASP VSSSCQSSLS 60 SNNHVVDSHA SKEVGEESCY DTGGYDDGMM MGLIGGEKGY SMDDIWKDIM SEEENNIYNN 120 NLQPVYEGHS EEGCNFSCPP PPMIMPSPPS WDQYNISSQP LWVMDEEESN KMLFPTLSDQ 180 YFPYYEQGNA FLTG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.29516 | 0.0 | cotyledon| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G142900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097274 | 1e-166 | BT097274.1 Soybean clone JCVI-FLGm-21F20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025980194.1 | 1e-144 | transcription factor MYB59 | ||||
Refseq | XP_028191333.1 | 1e-144 | transcription factor MYB59-like | ||||
TrEMBL | A0A0R0HH72 | 1e-143 | A0A0R0HH72_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445I1H2 | 1e-144 | A0A445I1H2_GLYSO; Transcription factor MYB48 isoform A | ||||
TrEMBL | I1LK65 | 1e-144 | I1LK65_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G15180.6 | 1e-143 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.1 | 2e-24 | myb domain protein 59 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G142900.2.p |