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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.11G142900.1.p |
| Common Name | GLYMA_11G142900, LOC100776886 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MYB |
| Protein Properties |
Length: 267aa MW: 30870.5 Da PI: 6.1019 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.11G142900.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 53.3 | 6.4e-17 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT++Ed +lv v+++G ++W+ Ia+ g++Rt+k+c++rw +yl
Glyma.11G142900.1.p 8 RGPWTEQEDYKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55
89********************************************97 PP
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| 2 | Myb_DNA-binding | 52.6 | 1e-16 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+ T++E+ l d++ ++G++ W++Iar+++ gRt++++k++w++++
Glyma.11G142900.1.p 61 RGKLTPQEEHLVMDLHSKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 106
7999******************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MVQQEIRRGP WTEQEDYKLV YFVNMFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPDLK 60
RGKLTPQEEH LVMDLHSKWG NRWSRIARRL PGRTDNEIKN YWRTHMRKKK AQEKKHASAA 120
SPVSSSCQSS LSSNNHVVDS HASKEVGEES CYDTGGYDDG MMMGLIGGEK GYSMDDIWKD 180
IMSEEENNIY NNNLQPVYEG HSEEGCNFSC PPPPMIMPSP PSWDQYNISS QPLWVMDEEE 240
SNKMLFPTLS DQYFPYYEQG NAFLTG*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB59-1 and isoform MYB59-2 are present in roots, leaves, and seedlings, while the expression of isoform MYB59-3 and isoform MYB59-4 is confined to seedlings. {ECO:0000269|PubMed:16531467}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Hickman R, et al.
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
Plant Cell, 2017. 29(9): p. 2086-2105
[PMID:28827376]
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