PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G142500.1.p
Common NameGLYMA_11G142500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 145aa    MW: 15893.5 Da    PI: 10.2669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G142500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00167092123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++Cp+Cg  F     L  H+r+H
  Glyma.11G142500.1.p 70 HQCPICGIEFGIGQALGGHMRKH 92
                         79********9999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.8472855IPR007087Zinc finger, C2H2
SuperFamilySSF576671.98E-72892No hitNo description
SMARTSM003550.22850IPR015880Zinc finger, C2H2-like
PfamPF139125.5E-112852IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SMARTSM003550.127092IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-87094IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MASCLMLLTK VSDTETPSRK RVLSGGDFKC KTCNRKFQSF QALGGHRASH KKLKLMASNL  60
SCSTVTQKMH QCPICGIEFG IGQALGGHMR KHRASLNDGL ITHDHVVPTS SGTKRLRLCL  120
DLNLAPYEND LNLNLRTPTL NLFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G142500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025980300.11e-103zinc finger protein ZAT8-like
SwissprotQ9SLD42e-28ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLI1LK591e-101I1LK59_SOYBN; Uncharacterized protein
STRINGGLYMA11G15140.11e-102(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-31C2H2 family protein