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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G140200.1.p | ||||||||
Common Name | GLYMA_11G140200, LOC100801154 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 336aa MW: 36560.3 Da PI: 9.4 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.8 | 5.6e-39 | 70 | 130 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Glyma.11G140200.1.p 70 PEAALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNK 130 57889*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-33 | 54 | 123 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.0E-33 | 73 | 128 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.665 | 74 | 128 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 76 | 112 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MVFSSIPVFV DPPNWQQQPN NHPQANNNGG DNTQLLPPLP PHQSHVGGSV GSIRPGSMAD 60 RARLAKLPPP EAALKCPRCD STNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRNVPVG 120 GGCRRNKKNK RSSRSKSPAS SEKQQTLSGS TSAIVPSGGT THEQIGHQLP QPQNLPFLAS 180 LQNLNRYAVG NMGLGLREIH GQNENMGFQI GNSSAGGGMD QWRLHQQVPF FNGFESTSAG 240 SYPFQNEGIN ETPSGFGGDI TTNSRVSQMP SVKMEESGAL NLSRSTLNNV LQKITSTIHG 300 LICQVLLLFL LLISCNFEHI TCMWSITTSP ELLCP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21544 | 0.0 | meristem| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G140200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235295 | 0.0 | AC235295.1 Glycine max strain Williams 82 clone GM_WBb0059N17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006590988.2 | 0.0 | dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A0R0HGZ1 | 0.0 | A0A0R0HGZ1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G14920.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF656 | 34 | 143 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 5e-48 | OBF-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G140200.1.p |
Entrez Gene | 100801154 |