PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G138700.2.p
Common NameGLYMA_11G138700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 673aa    MW: 75141.7 Da    PI: 7.9205
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G138700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.2e-07571620147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++ +E e lv+av++lG+g+W+ +  +     ++Rt  ++k++w ++
  Glyma.11G138700.2.p 571 RRPFSVDEVEALVQAVEKLGTGRWRDVKLCAFdnaNHRTYVDLKDKWKTL 620
                          6799***********************999999999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.907.5E-4376450No hitNo description
SuperFamilySSF542366.21E-7377462IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.293566625IPR017930Myb domain
SMARTSM007177.7E-8570623IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-10571621IPR009057Homeodomain-like
CDDcd116604.55E-17572622No hitNo description
SuperFamilySSF466894.0E-16572653IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MAIRLRPCRE LPDQLGRAKF RRAEDNQKCA FDLLATVAGK LLQERENPTM SSDTSLEKDQ  60
CGFVKECQDA NKPSKSEISD EGSCDNSGFS RLSSQTNKKN CGLKEFTHLA IDGDVGIASI  120
VTSSSCLERF IAEKMVDSNS HFKVENVTSK VNLDFSDYPK DSDFKLDGDT SKGKDELHKF  180
EKVPIGSGID MCNFEDPLDV NPPALISLGG NAKLSGYNDR IPCSLLSKSR DNVPVVSRDD  240
DENSSGCTHP INTETKSFRP KTCIGKRMAS NFQKVAEKTK NYALSNNDGD WKRTYLSKRN  300
CNKHQSSQMN IPFKKRKLFN YRSVANSNGL IRRGGIYYSP ENCMNQDGCD SPPGMHKDPG  360
MSSLEACQHQ TLRSIGSHVN LRIKSFRVPE LFIEVPETAT IGSLKRTVMD AVTAVLGGEL  420
HIGVFLQGKQ VKDDSKTLLQ TGISHHNELD ALGFTLEPNS SQSLPIVCAS HSPRPKADIT  480
EPVIRYPSSP AVIHQRIQGN SDMLPEHQVT SLGRHFESDH DSAPSPVNVS VDKNMKDSKE  540
LVTVPEMDEE LAMVPVHQKP KRSEIVQRRI RRPFSVDEVE ALVQAVEKLG TGRWRDVKLC  600
AFDNANHRTY VDLKDKWKTL VHTARISPQQ RRGEPVPQEL LDRVLVAHAY WSQQQTKSQH  660
KHHPETETVF SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-545556601105Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.310670.0cotyledon| leaf| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G138700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539084.10.0telomere repeat-binding protein 5 isoform X2
RefseqXP_028188279.10.0telomere repeat-binding protein 5-like isoform X2
TrEMBLA0A0R0HH120.0A0A0R0HH12_SOYBN; Uncharacterized protein
STRINGGLYMA11G14760.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-111TRF-like 2