PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G135800.1.p
Common NameGLYMA_11G135800, LOC102667172
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 169aa    MW: 18805.2 Da    PI: 6.0176
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G135800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000133456123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C + Fs+   L  H++ H
  Glyma.11G135800.1.p 34 FECNFCRRGFSNAQALGGHMNIH 56
                         89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-52760IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.91E-73161No hitNo description
PROSITE profilePS5015711.4063461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MESDLHHDHQ AAASENHPSD GEEQGASHVT SRSFECNFCR RGFSNAQALG GHMNIHRKDK  60
AKLKQQQSSN QIQQDQAKSY GEDSNKQKWN WNVSLQEHAI HKRQQLPLFA ESPTSSETQK  120
PQQGQTQTTT EQASLSTQDS SSELDLELRL GPEPQDSSAA ETGTRNFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G135800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925911e-179BT092591.1 Soybean clone JCVI-FLGm-11E20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590971.11e-122transcriptional regulator TAC1
RefseqXP_028187902.11e-122transcriptional regulator TAC1-like
TrEMBLI1LJY11e-120I1LJY1_SOYBN; Uncharacterized protein
STRINGGLYMA11G14400.11e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Representative plantOGRP19981133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-14C2H2 family protein