PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G126700.1.p
Common NameGLYMA_11G126700, LOC102667848
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 676aa    MW: 78320.9 Da    PI: 7.3528
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G126700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1514.8e-1660142191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY++YA+++GF  ++++skk  r+g+     ++Cs+eg+r +++ k      t ++ + +C+ak++v+ + dg w+++k +l+H+Hel+
  Glyma.11G126700.1.p  60 SFYRQYASRMGFGSKVRNSKKG-RDGKLHYFILTCSREGTRVPNTLK------TLPTIKNNCEAKITVSFK-DGLWYIMKAVLDHSHELS 141
                          5***************998887.8888****************9877......999**************9.*****************8 PP

                 FAR1  91 p 91 
                          p
  Glyma.11G126700.1.p 142 P 142
                          6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-1360142IPR004330FAR1 DNA binding domain
PfamPF105517.0E-36262356IPR018289MULE transposase domain
PROSITE profilePS509669.161548584IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MEDRNNHDEC WESNSVDNGA ESMEEVDELD VIMHDNMNGG FEPCEPASGM SFPSKEAVKS  60
FYRQYASRMG FGSKVRNSKK GRDGKLHYFI LTCSREGTRV PNTLKTLPTI KNNCEAKITV  120
SFKDGLWYIM KAVLDHSHEL SPTKAMMLRV NKNTSMHVNR TIEINHEAKA VMNKTIQSLA  180
CDVGGYRNLS FVEGDVKNHV LKERHTIGKE GDGKALRSYF LRMQEQNCNF FYDIDLDDFF  240
RVKNVFWADA RSRATYDSFG DVVTFDTTYL TKKYDMPFVS FVGVNHHGQH VLLGCALLSS  300
EDTESFVWLF ESWLRCMSGN PPKGIVTEQS KAIQKAIQLV FPTTQHRWCL WHVMKKIPEK  360
LKTNTEYNKN IKSAMRSVVY DTFTEAEFED QWSHFIKGFN LQDNEWLSEL YNERSRWVPI  420
FLKKDFWAGM STTQQGENVH PFFDGYINST TSLQQFVQLY DIALYGKVEK EFEADLRSFS  480
TTIHCGSNSM IEKQFQSAYT HAKFNEVQAE FRAKINCSVS LRDVEGSICT YDVLEDIIVE  540
GQPKEAIFEV VFHRDNHDFS CKCLLFEFRG IMCRHSLIVF AQERVKQVPS KYILQRWTKN  600
IKRRHSCTRS SYDLIQLKPQ MQRYDNLCKD FNEIAELAAE FEGVSHFLQN SLHDLKRKVQ  660
SMALSTHRPS SFLHK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.303950.0epicotyl| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G126700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590934.10.0protein FAR-RED IMPAIRED RESPONSE 1
RefseqXP_028188458.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445I0S50.0A0A445I0S5_GLYSO; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLK7LPF20.0K7LPF2_SOYBN; Uncharacterized protein
STRINGGLYMA11G13523.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-129FAR1 family protein