PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G124200.4.p
Common NameGLYMA_11G124200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 303aa    MW: 34675 Da    PI: 9.5369
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G124200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.6e-14401201298
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++++l +p +f+++ +++       +l  +sg +W+v++   kk++ +++ +GW++F k+n +   +f++F+++g ++f  +v++f 
  Glyma.11G124200.4.p  40 NTKQLKVPEEFLKHLNKD--LWSNSVLIGPSGDKWQVTI--LKKGNNVYMDNGWSQFLKDNSVVLDEFLLFTYHGGNCF--YVQIFG 120
                          457799******655544..4446899************..********************************999999..999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1829121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-1729122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.25229122IPR003340B3 DNA binding domain
SMARTSM010193.1E-1334122IPR003340B3 DNA binding domain
CDDcd100171.30E-1234119No hitNo description
PfamPF023623.3E-1140120IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MRDFSFHSND LLILQGNNRE RWKMDYHQDN PAVFFTTIKN TKQLKVPEEF LKHLNKDLWS  60
NSVLIGPSGD KWQVTILKKG NNVYMDNGWS QFLKDNSVVL DEFLLFTYHG GNCFYVQIFG  120
GNGLERLCRK EAREEQAATP QFFDLPFSNK ASISDGCEIK KTRQEQASAP SLARTNKSKQ  180
RKTFVGSSHL HESNSYKKGQ ERVATLSWAR TNNYNSTQRK TSAGSSHLHE SNSSKEDLPF  240
SNKASLSKDF PKPQSSINIE CSEACKLAES FTSRNPHWKH LLTKCNLERC ILVNMNLFSR  300
FE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G124200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3216600.0KT321660.1 Glycine max Glyma11g13220 (Glyma11g13220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590919.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_028186694.10.0putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLI1LJL00.0I1LJL0_SOYBN; Uncharacterized protein
STRINGGLYMA11G13220.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.16e-13B3 family protein