PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G124200.2.p
Common NameGLYMA_11G124200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 342aa    MW: 39767.1 Da    PI: 9.051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G124200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.5e-14401201298
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++++l +p +f+++ +++       +l  +sg +W+v++   kk++ +++ +GW++F k+n +   +f++F+++g ++f  +v++f 
  Glyma.11G124200.2.p  40 NTKQLKVPEEFLKHLNKD--LWSNSVLIGPSGDKWQVTI--LKKGNNVYMDNGWSQFLKDNSVVLDEFLLFTYHGGNCF--YVQIFG 120
                          457799******655544..4446899************..********************************999999..999986 PP
2B365.57.7e-21242336499
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           l+++ +l++++l +  +fa+++  + e   ++ l +++g+sWev++ y +++++    +++GW++Fv++n+L  gD+++F++++ ++++
  Glyma.11G124200.2.p 242 HLLTKCNLERCILLIAAEFARKYI-P-EALEQIYLWNSEGKSWEVRVHYFRNRNTwyAAFKRGWERFVRDNKLMKGDTCIFEVEE-EQGH 328
                          567788999**************4.2.33448***************99555555478899*********************755.9999 PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                            v++fr+
  Glyma.11G124200.2.p 329 WSVHIFRT 336
                          9****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1729122IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.25229122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-1829121IPR015300DNA-binding pseudobarrel domain
CDDcd100175.96E-1234119No hitNo description
SMARTSM010193.1E-1334122IPR003340B3 DNA binding domain
PfamPF023624.1E-1140120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-24232336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-21233337IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.916239337IPR003340B3 DNA binding domain
SMARTSM010195.8E-13239337IPR003340B3 DNA binding domain
PfamPF023627.7E-18242336IPR003340B3 DNA binding domain
CDDcd100171.55E-16244335No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MRDFSFHSND LLILQGNNRE RWKMDYHQDN PAVFFTTIKN TKQLKVPEEF LKHLNKDLWS  60
NSVLIGPSGD KWQVTILKKG NNVYMDNGWS QFLKDNSVVL DEFLLFTYHG GNCFYVQIFG  120
GNGLERLCRK EAREEQAATP QFFDLPFSNK ASISDGCEIK KTRQEQASAP SLARTNKSKQ  180
RKTFVGSSHL HESNSYKKDL PFSNKASLSK DFPKPQSSIN IECSEACKLA ESFTSRNPHW  240
KHLLTKCNLE RCILLIAAEF ARKYIPEALE QIYLWNSEGK SWEVRVHYFR NRNTWYAAFK  300
RGWERFVRDN KLMKGDTCIF EVEEEQGHWS VHIFRTGCAP H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G124200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3216600.0KT321660.1 Glycine max Glyma11g13220 (Glyma11g13220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590919.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_028186694.10.0putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A0R0HG420.0A0A0R0HG42_SOYBN; Uncharacterized protein
STRINGGLYMA11G13220.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-22B3 family protein