PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G124100.2.p
Common NameGLYMA_11G124100, LOC100815020
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 405aa    MW: 45752.9 Da    PI: 8.9523
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G124100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.61.9e-124692697
                         T---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3 26 hggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                         +gg+   s  +tl  ++g +W v l  +k +++y + +GWkeFv+   + +g  +vF+++g+s+f  +v++f
  Glyma.11G124100.2.p  4 YGGE--LSPIVTLSVPDGSVWHVGL--KKADNKYCFLDGWKEFVQRYSIGVGYLLVFRYEGKSSF--NVHIF 69
                         5444..455799999**********..*********************************99999..88887 PP
2B355.51e-17274363497
                          E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                   B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                          vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++    k+gr  l++GW eF  +n+L egD++vF+l + +e  l
  Glyma.11G124100.2.p 274 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRC--LYKGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVL 358
                          78899******************877743...59**************..66666778***********************998788878 PP

                          EEEEE CS
                   B3  93 vvkvf 97 
                           v++f
  Glyma.11G124100.2.p 359 QVTIF 363
                          88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-17170IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.01172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365172IPR003340B3 DNA binding domain
CDDcd100171.11E-14170No hitNo description
SuperFamilySSF1019369.22E-17270IPR015300DNA-binding pseudobarrel domain
PfamPF023626.5E-10369IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.8E-24263364IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-24264364IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-21269363No hitNo description
PROSITE profilePS5086313.592271366IPR003340B3 DNA binding domain
SMARTSM010194.9E-15271366IPR003340B3 DNA binding domain
PfamPF023621.0E-15274363IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MRKYGGELSP IVTLSVPDGS VWHVGLKKAD NKYCFLDGWK EFVQRYSIGV GYLLVFRYEG  60
KSSFNVHIFN LATSEINYQS VTRSSNEGLH FTNCLKFFEE MEGEDSIEIS DSSPSHLSPS  120
SLQNQALAGS VDKMMPGKSY NTPPALQNLF NGSKLNSINW GEGGNAHSSR SANSLDNRLT  180
RDIGLQFNAV EFKRSTEELK LRASIEERMK KTTRKKRKSD GQEPSAGHEE EVEMRFRFYE  240
SASARKRTVT AEERERVINE AKAFEPSNPF CRVVLRPSYL YRGCIMYLPS CFAEKHLNGV  300
SGFIKLQISN GRQWPVRCLY KGGRAKLSQG WFEFSLENNL GEGDVCVFEL LRMKEVVLQV  360
TIFHVTEDVG LLSPPLQHNQ NMTSAKLLST PLQQHLTSTK MVRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-7123736915146B3 domain-containing transcription factor VRN1
4i1k_B1e-7123736915146B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.413110.0hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G124100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351720.0AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590918.10.0B3 domain-containing transcription factor VRN1 isoform X3
RefseqXP_028186697.10.0B3 domain-containing transcription factor VRN1-like isoform X3
SwissprotQ8L3W11e-115VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A0R0HGC70.0A0A0R0HGC7_SOYBN; Uncharacterized protein
TrEMBLA0A445I1290.0A0A445I129_GLYSO; B3 domain-containing transcription factor VRN1 isoform D
STRINGGLYMA11G13210.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-73B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]