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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.11G124100.2.p |
Common Name | GLYMA_11G124100, LOC100815020 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
B3 |
Protein Properties |
Length: 405aa MW: 45752.9 Da PI: 8.9523 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.11G124100.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 38.6 | 1.9e-12 | 4 | 69 | 26 | 97 |
T---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 26 hggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
+gg+ s +tl ++g +W v l +k +++y + +GWkeFv+ + +g +vF+++g+s+f +v++f
Glyma.11G124100.2.p 4 YGGE--LSPIVTLSVPDGSVWHVGL--KKADNKYCFLDGWKEFVQRYSIGVGYLLVFRYEGKSSF--NVHIF 69
5444..455799999**********..*********************************99999..88887 PP
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2 | B3 | 55.5 | 1e-17 | 274 | 363 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
vl ps+ + ++++lp fae+h +g++ ++l+ ++gr+W v++ k+gr l++GW eF +n+L egD++vF+l + +e l
Glyma.11G124100.2.p 274 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRC--LYKGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVL 358
78899******************877743...59**************..66666778***********************998788878 PP
EEEEE CS
B3 93 vvkvf 97
v++f
Glyma.11G124100.2.p 359 QVTIF 363
88887 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MRKYGGELSP IVTLSVPDGS VWHVGLKKAD NKYCFLDGWK EFVQRYSIGV GYLLVFRYEG 60 KSSFNVHIFN LATSEINYQS VTRSSNEGLH FTNCLKFFEE MEGEDSIEIS DSSPSHLSPS 120 SLQNQALAGS VDKMMPGKSY NTPPALQNLF NGSKLNSINW GEGGNAHSSR SANSLDNRLT 180 RDIGLQFNAV EFKRSTEELK LRASIEERMK KTTRKKRKSD GQEPSAGHEE EVEMRFRFYE 240 SASARKRTVT AEERERVINE AKAFEPSNPF CRVVLRPSYL YRGCIMYLPS CFAEKHLNGV 300 SGFIKLQISN GRQWPVRCLY KGGRAKLSQG WFEFSLENNL GEGDVCVFEL LRMKEVVLQV 360 TIFHVTEDVG LLSPPLQHNQ NMTSAKLLST PLQQHLTSTK MVRN*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 1e-71 | 237 | 369 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-71 | 237 | 369 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC235172 | 0.0 | AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence. |