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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.11G124100.1.p |
| Common Name | GLYMA_11G124100, LOC100815020 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
B3 |
| Protein Properties |
Length: 432aa MW: 48890.6 Da PI: 9.1069 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.11G124100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 59.6 | 5.7e-19 | 6 | 96 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
f k l+ps v +++l+lp +f++++gg+ s +tl ++g +W v l +k +++y + +GWkeFv+ + +g +vF+++g+s+f
Glyma.11G124100.1.p 6 FHKLLLPSTVQPNQQLRLPDNFMRKYGGE--LSPIVTLSVPDGSVWHVGL--KKADNKYCFLDGWKEFVQRYSIGVGYLLVFRYEGKSSF-- 91
899***********************887..7779***************..*********************************99999.. PP
EEEEE CS
B3 93 vvkvf 97
+v++f
Glyma.11G124100.1.p 92 NVHIF 96
88887 PP
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| 2 | B3 | 55.3 | 1.2e-17 | 301 | 390 | 4 | 97 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
vl ps+ + ++++lp fae+h +g++ ++l+ ++gr+W v++ k+gr l++GW eF +n+L egD++vF+l + +e l
Glyma.11G124100.1.p 301 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRC--LYKGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVL 385
78899******************877743...59**************..66666778***********************998788878 PP
EEEEE CS
B3 93 vvkvf 97
v++f
Glyma.11G124100.1.p 386 QVTIF 390
88887 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 432 aa
Download sequence Send
to blast |
MPHPSFHKLL LPSTVQPNQQ LRLPDNFMRK YGGELSPIVT LSVPDGSVWH VGLKKADNKY 60
CFLDGWKEFV QRYSIGVGYL LVFRYEGKSS FNVHIFNLAT SEINYQSVTR SSNEGLHFTN 120
CLKFFEEMEG EDSIEISDSS PSHLSPSSLQ NQALAGSVDK MMPGKSYNTP PALQNLFNGS 180
KLNSINWGEG GNAHSSRSAN SLDNRLTRDI GLQFNAVEFK RSTEELKLRA SIEERMKKTT 240
RKKRKSDGQE PSAGHEEEVE MRFRFYESAS ARKRTVTAEE RERVINEAKA FEPSNPFCRV 300
VLRPSYLYRG CIMYLPSCFA EKHLNGVSGF IKLQISNGRQ WPVRCLYKGG RAKLSQGWFE 360
FSLENNLGEG DVCVFELLRM KEVVLQVTIF HVTEDVGLLS PPLQHNQNMT SAKLLSTPLQ 420
QHLTSTKMVR N*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4i1k_A | 3e-71 | 264 | 396 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
| 4i1k_B | 3e-71 | 264 | 396 | 15 | 146 | B3 domain-containing transcription factor VRN1 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC235172 | 0.0 | AC235172.1 Glycine max strain Williams 82 clone GM_WBb0002N17, complete sequence. |
