PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G118900.2.p
Common NameGLYMA_11G118900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 786aa    MW: 84607.6 Da    PI: 4.4479
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G118900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.91e-12130171245
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          g+WT +E +ll++a +++  + W+ Ia+++g ++t  qc++++ 
  Glyma.11G118900.2.p 130 GKWTDQETLLLLEALELYKEN-WNEIAEHVG-TKTKAQCILHFV 171
                          89*****************88.*********.**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578504.0E-1165118No hitNo description
SMARTSM002911.0E-669113IPR000433Zinc finger, ZZ-type
PROSITE profilePS501359.2669115IPR000433Zinc finger, ZZ-type
PfamPF005694.3E-972107IPR000433Zinc finger, ZZ-type
CDDcd023362.44E-1973117No hitNo description
PROSITE patternPS01357075101IPR000433Zinc finger, ZZ-type
Gene3DG3DSA:1.10.10.605.0E-9126170IPR009057Homeodomain-like
PROSITE profilePS5129322.307127178IPR017884SANT domain
SuperFamilySSF466892.54E-13127179IPR009057Homeodomain-like
SMARTSM007172.6E-13128176IPR001005SANT/Myb domain
PfamPF002491.3E-12130172IPR001005SANT/Myb domain
CDDcd001674.33E-4148173No hitNo description
PfamPF164956.0E-25631708IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MLETQMLGKS DDGEAEKNSL LEKLYHFETL QLCPPVQRSS QMTPATTSGL FPESTIAEEL  60
VKQEGPAVEM LEYHCNSCSA DCSRKRYHCQ KQADFDLCTD CFSNRRFGSG MSSLDFILME  120
PAEVAGVNGG KWTDQETLLL LEALELYKEN WNEIAEHVGT KTKAQCILHF VQMPIEDTFV  180
DCDDDVVAVC KETVDPVATN NDSSMDKDAS ECIENDTSDG IKDNDKTSKA EDLEVKVNQE  240
ETTKLQEGSD EKSTEGTSKS EDAVKVKIDQ EAGNDCAINA LKEAFAAVGY SPGPEGPSSF  300
AEVGNPVMAL ATFLAHLVGS DVAVASAHSS IKSMSRNSPG TELAARCCFL LKDPPDNEKE  360
PTNSERDSKS EGDQDEVNVK QDKPTLEDKD LPNDHSNTKI ETNALEVKGQ PASTDDGALE  420
KPISSKEQAV SNHEGGLDNG NDPNNAKLPN DQAPATLHNS GGSTSKAEIP LCSDKAQEET  480
LIEESCPSVK DKHVSDSLLS DTSKDAEMVS NSIPSTKSKP QNPEPTNPAC ESLETTDSVM  540
DVDGVSNSLP SEKIDSQPLI TSKSSQCNGT EKDVDMMSPS NPVVSNSGAE NGPNTGAGKD  600
HADNGAKVED DGTETKQDSS FEKVKRAAVS TLAAAAAKAK LLANQEEDQI RQLTSLLIEK  660
QLHKLETKLA FFNDVENVVM RAREHVERSR HKLYHERALI IASRLGIPPS SSRGVPPSIT  720
TNRIPTNIAN SLPRPQMMMN PPRPLISRPA GTVATTLQNP LVSSTAAGNS VRPSNQEKLS  780
SVGTK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.350410.0cotyledon| leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G118900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539020.20.0SWI/SNF complex subunit SWI3D
RefseqXP_028188811.10.0SWI/SNF complex subunit SWI3D-like
TrEMBLA0A0R0HFV50.0A0A0R0HFV5_SOYBN; Uncharacterized protein
STRINGGLYMA11G12640.20.0(Glycine max)