PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G114800.1.p
Common NameGLYMA_11G114800, Glyma11g12240.1, LOC547956
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 167aa    MW: 18477.7 Da    PI: 6.5309
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G114800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1422.1e-133190463
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                          ++ +r+++NRe+ArrsR RK++ ++ L   v++L +eN++    ++  ++++ ++++e+
  Glyma.11G114800.1.p 31 QRKRKRMISNRESARRSRMRKQKHLDDLVSQVAQLRKENQQILTSVNITTQQYLSVEAEN 90
                         577899***********************************9999999999998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-112879No hitNo description
SMARTSM003381.6E-182892IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.7493093IPR004827Basic-leucine zipper domain
PfamPF001702.7E-103177IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.81E-133284No hitNo description
CDDcd147026.52E-203383No hitNo description
PROSITE patternPS0003603550IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MACSSGTSSG SLSLLQNSGS EEDLQAMMED QRKRKRMISN RESARRSRMR KQKHLDDLVS  60
QVAQLRKENQ QILTSVNITT QQYLSVEAEN SVLRAQVGEL SHRLESLNEI VDVLNATTTV  120
AGFGAAASST FVEPMNNNNN SFFNFNPLNM GYLNQPIMAS ADILQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13152RKRKRMISNRESARRSRMRKQK
24451RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.326290.0cotyledon| epicotyl| flower| hypocotyl| leaf| meristem| pod| root| seed coat| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G114800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5326210.0AF532621.1 Glycine max bZIP transcription factor ATB2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001236565.11e-119bZIP transcription factor ATB2
RefseqXP_028190081.11e-119bZIP transcription factor 11-like
SwissprotC0Z2L51e-51BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A445I0A11e-118A0A445I0A1_GLYSO; BZIP transcription factor 44
TrEMBLQ8L5W21e-118Q8L5W2_SOYBN; BZIP transcription factor
STRINGGLYMA11G12240.11e-118(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Representative plantOGRP5511678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-44basic leucine-zipper 44
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]