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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.11G113200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
SRS |
| Protein Properties |
Length: 216aa MW: 24179.3 Da PI: 9.1277 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.11G113200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 93 | 6.2e-29 | 7 | 70 | 4 | 70 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaea 70
++++C+dCGnqakkdC+++RCRtCCk+++f+C+th++stW+p+++rr+++ +++ ++++ +a+
Glyma.11G113200.1.p 7 KGSKCEDCGNQAKKDCEYSRCRTCCKNKAFKCQTHIRSTWIPVDRRRHQKLEHQPLTTNLKAD---T 70
6789********************************************866666665554433...3 PP
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| 2 | DUF702 | 76 | 1.1e-23 | 72 | 138 | 89 | 155 |
DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155
k +++++ ++le ++P+ +ss+a+f+cv+v+s+dd +e+aYqt+v+igGhvf+G+LydqG++++
Glyma.11G113200.1.p 72 PKRHKHNPYSSLEEFKFPAVMSSMALFSCVQVRSMDDTVNEIAYQTSVNIGGHVFSGLLYDQGPQQQ 138
4445667777888888************************************************975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 216 aa
Download sequence Send
to blast |
MEAQVVKGSK CEDCGNQAKK DCEYSRCRTC CKNKAFKCQT HIRSTWIPVD RRRHQKLEHQ 60
PLTTNLKADT IPKRHKHNPY SSLEEFKFPA VMSSMALFSC VQVRSMDDTV NEIAYQTSVN 120
IGGHVFSGLL YDQGPQQQSF NVSKGDNNSS IDPFVQQHSL NLRSSASIHT RNGASANMPP 180
LSATASAQEP FFPPPHPFPL ASFRPDMRYL SHPKP*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ580823 | 2e-46 | AJ580823.1 Lotus corniculatus var. japonicus ORF1, ORF2, ORF3 and genes for vacuolar proton-ATPase subunit-like protein, papain-like cysteine proteinase-like protein 1 and papain-like cysteine proteinase-like protein 2. |
| GenBank | AP005666 | 2e-46 | AP005666.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT09E01, TM0258b. |
