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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G112800.1.p | ||||||||
Common Name | GLYMA_11G112800, LOC100790232 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | DBB | ||||||||
Protein Properties | Length: 289aa MW: 31836.8 Da PI: 6.8075 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.3 | 5.7e-07 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++++ +++fC +++ lC+ C ++H+ H++ Glyma.11G112800.1.p 4 QCDVCHNEVASFFCPSDEASLCHACDRTIHHAnkladkHKR 44 7****************************744477777765 PP | |||||||
2 | zf-B_box | 29.1 | 2e-09 | 55 | 92 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38 + C+ ++e ++ lfC++++ lC++C l++H g Ht Glyma.11G112800.1.p 55 SPLCDICHERRAYLFCKEDRAILCRECDLSIH-GvneHT 92 689*****************************.667776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.793 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.29E-7 | 3 | 33 | No hit | No description |
Pfam | PF00643 | 6.6E-6 | 4 | 44 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.779 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.8E-7 | 55 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.18E-11 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MKIQCDVCHN EVASFFCPSD EASLCHACDR TIHHANKLAD KHKRFSLHHP TSKDSPLCDI 60 CHERRAYLFC KEDRAILCRE CDLSIHGVNE HTKKHNRFLL TGVKIGADAS DPTSLSSNDT 120 AIEERTTSSS KINRPISSLS NENISSSPTV GDNMACDTGS VSTSSISEYL IQTIPGYCME 180 DLLDASFASN GLSKDYEHQS AFQNQDVQVS MCSFPLQSWV PQSQAGSPQL ISTTSNLHPQ 240 INSLVGVMEM PKAKASEGYS NCIYNYDYSA YKVPSICPPL IKKCKRSR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G112800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003539006.1 | 0.0 | B-box zinc finger protein 20 | ||||
Refseq | XP_028188619.1 | 0.0 | B-box zinc finger protein 20-like | ||||
TrEMBL | A0A0R0HLR0 | 0.0 | A0A0R0HLR0_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445I044 | 0.0 | A0A445I044_GLYSO; B-box zinc finger protein 21 isoform A | ||||
STRING | GLYMA11G12060.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Representative plant | OGRP2984 | 11 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 8e-62 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G112800.1.p |
Entrez Gene | 100790232 |