PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.11G110900.2.p | ||||||||
Common Name | GLYMA_11G110900, LOC100527369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 213aa MW: 23765.8 Da PI: 6.2966 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.5 | 2.4e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC C ++H Glyma.11G110900.2.p 4 LCDVCESAAAILFCAADEAALCSACDHKIH 33 7***************************99 PP | |||||||
2 | zf-B_box | 25.9 | 2.1e-08 | 53 | 91 | 3 | 37 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 ++C+ +e+ ++ ++Ce +++ lC +C + H g H Glyma.11G110900.2.p 53 VPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91 689**************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 6.9E-6 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.783 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.00E-5 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 1.6E-5 | 3 | 34 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.873 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.1E-6 | 53 | 85 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.70E-6 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MRTLCDVCES AAAILFCAAD EAALCSACDH KIHMCNKLAS RHVRVGLADP TDVPRCDICE 60 NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR AQFPGDKPAQ MEELELQPMD 120 QNESRRDESQ SLKLKTRDSQ QNHSVSPFPR QENNIDGHGK MDKKLIDLNT RPLRLNGSAP 180 NNQEQCMDIL RGNNHESASV PPVESFKQES EK* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.27677 | 0.0 | cotyledon |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.11G110900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT092206 | 0.0 | BT092206.1 Soybean clone JCVI-FLGm-10I4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235095.1 | 1e-157 | uncharacterized protein LOC100527369 | ||||
Refseq | XP_028188136.1 | 1e-157 | B-box zinc finger protein 19-like | ||||
Swissprot | C0SVM5 | 3e-80 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A445I0F6 | 1e-156 | A0A445I0F6_GLYSO; B-box zinc finger protein 19 isoform A (Fragment) | ||||
STRING | GLYMA11G11850.2 | 1e-157 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38960.1 | 1e-82 | DBB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.11G110900.2.p |
Entrez Gene | 100527369 |