PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G110900.1.p
Common NameGLYMA_11G110900, LOC100527369
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family DBB
Protein Properties Length: 213aa    MW: 23765.8 Da    PI: 6.2966
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G110900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.4e-07433534
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                          C+ +e+  ++lfC  ++  lC  C  ++H
  Glyma.11G110900.1.p  4 LCDVCESAAAILFCAADEAALCSACDHKIH 33
                         7***************************99 PP
2zf-B_box25.92.1e-085391337
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                          ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Glyma.11G110900.1.p 53 VPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                         689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.9E-6147IPR000315B-box-type zinc finger
PROSITE profilePS501199.783147IPR000315B-box-type zinc finger
CDDcd000214.00E-5345No hitNo description
PfamPF006431.6E-5334IPR000315B-box-type zinc finger
SMARTSM003361.1E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501198.8735196IPR000315B-box-type zinc finger
PfamPF006433.1E-65385IPR000315B-box-type zinc finger
CDDcd000211.70E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009640Biological Processphotomorphogenesis
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCSACDH KIHMCNKLAS RHVRVGLADP TDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLLRQR AQFPGDKPAQ MEELELQPMD  120
QNESRRDESQ SLKLKTRDSQ QNHSVSPFPR QENNIDGHGK MDKKLIDLNT RPLRLNGSAP  180
NNQEQCMDIL RGNNHESASV PPVESFKQES EK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.276770.0cotyledon
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G110900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0922060.0BT092206.1 Soybean clone JCVI-FLGm-10I4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235095.11e-157uncharacterized protein LOC100527369
RefseqXP_028188136.11e-157B-box zinc finger protein 19-like
SwissprotC0SVM53e-80BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A445I0F61e-156A0A445I0F6_GLYSO; B-box zinc finger protein 19 isoform A (Fragment)
STRINGGLYMA11G11850.21e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-82DBB family protein