PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 791aa MW: 90291.3 Da PI: 6.8384

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G088700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.1	1.2e-31	84	175	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYn+YA++vGFs+r+s s++s+r+g+i++r fvC keg+r e++k+ + + +r+raetr+gCka+l+vk +++g+w+v+++ +eHnHel Glyma.11G088700.1.p 84 FYNSYARRVGFSTRVSMSRRSRRDGSIIQRSFVCAKEGFRVEREKHlvDGRVKRPRAETRVGCKAMLVVKIQDSGRWVVSSFLKEHNHEL 173 9******************************************988888999********************************** PP FAR1 90 ap 91 +p Glyma.11G088700.1.p 174 VP 175 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-29	84	175	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-31	298	390	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.806	578	614	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.1E-9	586	613	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-7	589	616	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MEFEPLSLSD EVIEFDMIGL GDDAAIDTEH PVEDDEDLVN IDNSPATAFT VLAAGLGPHI 60 AGGDTNLEPC QGMEFESEEA AKAFYNSYAR RVGFSTRVSM SRRSRRDGSI IQRSFVCAKE 120 GFRVEREKHL VDGRVKRPRA ETRVGCKAML VVKIQDSGRW VVSSFLKEHN HELVPPDKVH 180 CLRSHRHVSG PAKSLIDTLQ GAGIGPSGIM SALIKEYGAI SNIGFTERDC RNYMRSSRQR 240 TLGGDTQILL DYLKSKQAEN PSFFYAVQLQ GDEDHCMSNI FWVDSKARTN YTYFGDTVTF 300 DTAYRSNRYR LPFAPFTGVN HHGQPVLFGC ALLINESEAS FVWLFKTWLE AMTGQPPVSI 360 TTDHDRVIRA AINNVFPGTR HRFCKWHVFK ECQEMLSHVL SEHLNFEADL HKCVNLTESI 420 EEFESCWSSL IDRYDLKEHE WLKAIYGDRR QWVPVYLRDT FFAEMSITQR SDSINSYFDG 480 YINASTTLQL FVKQYEKALE SRYEKEVKAD YDTINTTPVL KTPSPLEKQA AEVYTRRLFI 540 KFQEELVETL TFLANKVDEK EIITVYRVAK YGEMHRAYFV RFNSFEMKAT CTCQMFEFSG 600 LVCRHILTVF RVINLLTLPS HYILKRWSRI AKSGAILDER TTNLSTRAQE SLTIRYNNLR 660 HKALKYADEG INSPKVYDVA LSALLEAASK VALATKNGGR QTILNGTCEE DLHQSNEATT 720 SCSDSPIGSQ QSSYKDDQDR TIEKLTRQLD RARRKCEVYR SNLLSVLKDI EEQKLQLSVK 780 VQNIKLEMKD *

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MEFEPLSLSD EVIEFDMIGL GDDAAIDTEH PVEDDEDLVN IDNSPATAFT VLAAGLGPHI  60
AGGDTNLEPC QGMEFESEEA AKAFYNSYAR RVGFSTRVSM SRRSRRDGSI IQRSFVCAKE  120
GFRVEREKHL VDGRVKRPRA ETRVGCKAML VVKIQDSGRW VVSSFLKEHN HELVPPDKVH  180
CLRSHRHVSG PAKSLIDTLQ GAGIGPSGIM SALIKEYGAI SNIGFTERDC RNYMRSSRQR  240
TLGGDTQILL DYLKSKQAEN PSFFYAVQLQ GDEDHCMSNI FWVDSKARTN YTYFGDTVTF  300
DTAYRSNRYR LPFAPFTGVN HHGQPVLFGC ALLINESEAS FVWLFKTWLE AMTGQPPVSI  360
TTDHDRVIRA AINNVFPGTR HRFCKWHVFK ECQEMLSHVL SEHLNFEADL HKCVNLTESI  420
EEFESCWSSL IDRYDLKEHE WLKAIYGDRR QWVPVYLRDT FFAEMSITQR SDSINSYFDG  480
YINASTTLQL FVKQYEKALE SRYEKEVKAD YDTINTTPVL KTPSPLEKQA AEVYTRRLFI  540
KFQEELVETL TFLANKVDEK EIITVYRVAK YGEMHRAYFV RFNSFEMKAT CTCQMFEFSG  600
LVCRHILTVF RVINLLTLPS HYILKRWSRI AKSGAILDER TTNLSTRAQE SLTIRYNNLR  660
HKALKYADEG INSPKVYDVA LSALLEAASK VALATKNGGR QTILNGTCEE DLHQSNEATT  720
SCSDSPIGSQ QSSYKDDQDR TIEKLTRQLD RARRKCEVYR SNLLSVLKDI EEQKLQLSVK  780
VQNIKLEMKD *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G088700.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003538916.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1LIE2	0.0	I1LIE2_SOYBN; Uncharacterized protein
STRING	GLYMA11G09400.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Glyma.11G088700.1.p
Entrez Gene	100782414

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]