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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G075900.1.p | ||||||||
Common Name | GLYMA_11G075900, LOC102661359 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 350aa MW: 38491.8 Da PI: 5.524 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.3 | 4e-06 | 324 | 343 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+ + C+ G+rC+F H Glyma.11G075900.1.p 324 CKFYNTSKGCRNGSRCRFQH 343 ******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.418 | 318 | 346 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-4 | 323 | 343 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 324 | 346 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDRSKNSKTV RWAQESSLRE VHVFSPDKDC SSMVGKKCQE HLQAKSSSIS PSTTDDNNDL 60 PPGFRPIIDV SRIPQIKWKC PPSVVLNSGW RMAAGEESTE KDNQKQRELK KLEAVYPRDS 120 HIPADPFVSS DVENELGYDD SDTPLVPLES EEDVENELGY DDSDSTPLVP LESKEDIAIS 180 TVPPSNLGEA DVATALATVM AIVKHNEEPG NSIIDANFIL RLANDPKMLK ELTDSNNNNP 240 ENASLTMPAP PQITATAQTS PPPSLKRGTK RAIPSGSERK SCSEQAWPSG GSVSSSQPRV 300 VKKDVDYYRN QVTKNDSGKV NKQCKFYNTS KGCRNGSRCR FQHTSVWKM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G075900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006590721.1 | 0.0 | zinc finger CCCH domain-containing protein 30 | ||||
Refseq | XP_028187335.1 | 0.0 | zinc finger CCCH domain-containing protein 30-like | ||||
TrEMBL | A0A445HYD4 | 0.0 | A0A445HYD4_GLYSO; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | K7LNJ4 | 0.0 | K7LNJ4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G08041.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24257 | 2 | 2 |
Representative plant | OGRP2129 | 6 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 8e-07 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G075900.1.p |
Entrez Gene | 102661359 |