PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G074900.3.p | ||||||||
Common Name | GLYMA_11G074900, LOC100795117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | DBB | ||||||||
Protein Properties | Length: 185aa MW: 20266.2 Da PI: 7.3756 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.7 | 2e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++ fC ++ lC+ C ++ H Glyma.11G074900.3.p 4 LCDACESAAAIVFCAADEAALCRACDEKVH 33 7**************************998 PP | |||||||
2 | zf-B_box | 30.9 | 5.7e-10 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce++++ lC +C + H g H Glyma.11G074900.3.p 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 91 6799**************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 4.4E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.239 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.37E-6 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 7.3E-6 | 3 | 42 | IPR000315 | B-box-type zinc finger |
SuperFamily | SSF57845 | 9.16E-6 | 48 | 86 | No hit | No description |
SMART | SM00336 | 2.1E-11 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.158 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.1E-8 | 52 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.81E-7 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLASP SDVPRCDICE 60 NAPAFFYCET DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGDKSSH AENPASQALE 120 PGEAKRGQNP LPKLKMGEKQ QNHRMPMVPT PGPDADGQTK METKMIDLNM KPNRIHEQAS 180 NNQP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.3546 | 0.0 | cotyledon| epicotyl| flower| hypocotyl| leaf| pod| root| somatic embryo| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G074900.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095448 | 0.0 | BT095448.1 Soybean clone JCVI-FLGm-19K10 unknown mRNA. | |||
GenBank | BT098772 | 0.0 | BT098772.1 Soybean clone JCVI-FLGm-12P20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241539.1 | 1e-136 | uncharacterized protein LOC100795117 | ||||
Refseq | XP_006590311.1 | 1e-136 | uncharacterized protein LOC100795117 isoform X2 | ||||
Refseq | XP_028186835.1 | 1e-136 | B-box zinc finger protein 18-like isoform X2 | ||||
Swissprot | C0SVM5 | 1e-73 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A445HZ58 | 1e-135 | A0A445HZ58_GLYSO; B-box zinc finger protein 19 isoform B | ||||
TrEMBL | C6TCZ9 | 1e-135 | C6TCZ9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G07930.1 | 1e-135 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 5e-76 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G074900.3.p |
Entrez Gene | 100795117 |