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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G068400.1.p | ||||||||
Common Name | GLYMA_11G068400, LOC100790046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 125aa MW: 14431.1 Da PI: 6.9588 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.7 | 1.1e-07 | 13 | 57 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +rWT e +l+ +a + + ++ +W+ Ia +g g t+ q+k + Glyma.11G068400.1.p 13 LRWTSEKNKLFENALAIYDKDtpeRWNNIAMFVG-GTTEVQVKRQY 57 79********************************.********877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.7E-5 | 11 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.79E-6 | 14 | 61 | No hit | No description |
SuperFamily | SSF46689 | 3.74E-11 | 14 | 69 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MTTSTLSSPD TSLRWTSEKN KLFENALAIY DKDTPERWNN IAMFVGGTTE VQVKRQYEIL 60 LEDIKNIESG KVPLPAYTRN AGCSKLNISS AEQRLRDLKL WRKNDFQSEE EHHFSRTHFS 120 IDHQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-27 | 15 | 100 | 11 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G068400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP007301 | 4e-74 | AP007301.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT20E01, TM0549, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006590687.1 | 1e-89 | protein RADIALIS-like 1 | ||||
Swissprot | F4JVB8 | 1e-29 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A0R0HPY0 | 3e-88 | A0A0R0HPY0_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445HY11 | 3e-88 | A0A445HY11_GLYSO; Protein RADIALIS-like 1 | ||||
STRING | GLYMA11G07310.1 | 4e-64 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 8e-32 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G068400.1.p |
Entrez Gene | 100790046 |
Publications ? help Back to Top | |||
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