PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G062300.1.p
Common NameGLYMA_11G062300, LOC100777243
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 706aa    MW: 76533.1 Da    PI: 7.5511
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G062300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-094715081954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Glyma.11G062300.1.p 471 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 508
                          664559******************************88 PP
2BELL120.38.5e-39330401172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ ++g g+a pYt+lA+ka+SrhFrcLk+ai+ q+
  Glyma.11G062300.1.p 330 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKEAITAQL 401
                          589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-76263399IPR006563POX domain
PfamPF075261.6E-51268398IPR006563POX domain
PROSITE profilePS5007112.568449512IPR001356Homeobox domain
CDDcd000864.41E-12452513No hitNo description
SMARTSM003891.2E-9452516IPR001356Homeobox domain
SuperFamilySSF466893.34E-17453519IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-29455518IPR009057Homeodomain-like
PfamPF059203.5E-18469508IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MSQDFQQGIF SFPNGLERGR LVSPQQQIRR DKVRFEAAAP LVGIEEEEPV YETAGMLSEM  60
FNFPPATELL EQQHATATFR AARQAGEWYG NRQQQQQISG INADSAAAMQ LFLMNPQTRS  120
PSPPQTHATP SSTLHMLLPN PSSNSSLQGF TGSAAGGSFG QFTWVPESAH QQGGVVEGQG  180
LSLSLSSSLE AAKAEELRMG DSGFLYYNHQ QGGGGGGGSS SSSAVQFQYK NNNNNHHQAL  240
HLQGAMGHDN NHQGHVGFGS SSLGVVNVLR NSKYAKAAQE LLEEFCSVGR GQFKKSKFNR  300
QNSNPNSNAG GGASPSSKDA PPPPPLSAAD RIEHQRRKVK LLSMLDEVDR RYNHYCEQMQ  360
MVVNSFDLMM GFGAAVPYTA LAQKAMSRHF RCLKEAITAQ LKQSCEVLGE KDGAGNSGGL  420
TKGETPRLKM LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS  480
DADKHLLARQ TGLSRNQVSN WFINARVRLW KPMVEEMYQQ ELKEAESAED RENNNSNISG  540
NQAQTPTTPS AATTSTATAP PPPPPTTTAT KPTGKRSDAI NAPDSDPSQH VAMNNRQGFS  600
ENQAKKSTAS TTATTTTAAA SEVAPPVSQC FDSDLPPHRL MASNDNTCRL VTADFGTASA  660
SADIGSTLIR FGTTPGDVSL TLGLRHAGNM PSEKTPFSVR EFGAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16458516563Homeobox protein Meis2
3k2a_B2e-16458516563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.592820.0cotyledon| flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G062300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003538830.10.0BEL1-like homeodomain protein 4
RefseqXP_014619348.10.0BEL1-like homeodomain protein 4
RefseqXP_028186771.10.0BEL1-like homeodomain protein 4
RefseqXP_028186772.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-171BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A445HXY60.0A0A445HXY6_GLYSO; BEL1-like homeodomain protein 2 isoform A
TrEMBLK7LNB70.0K7LNB7_SOYBN; Uncharacterized protein
STRINGGLYMA11G06640.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-137BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]