PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G056200.1.p
Common NameGLYMA_11G056200, LOC100783832
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 286aa    MW: 31585.3 Da    PI: 9.4504
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G056200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind120.68.7e-38111022102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y+++ed+ ++e+isw e+gn+fvv+++ +fak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+k
  Glyma.11G056200.1.p  11 FLTKTYQLVEDPGTDEVISWGESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANEHFKRGQK 91 
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          ell++ikr+k+
  Glyma.11G056200.1.p  92 ELLSEIKRRKT 102
                          *********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.5E-637100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.94E-358100IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-398100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-211134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3211100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-214961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-216274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MLQQRSVPAP FLTKTYQLVE DPGTDEVISW GESGNTFVVW KHADFAKDLL PKYFKHNNFS  60
SFVRQLNTYG FRKIVPDKWE FANEHFKRGQ KELLSEIKRR KTVPQSSTHS PDAGKPGAEG  120
NSPSNPGGCD DAGSTSTSSS SSGSKNQGSV ETNTTPSHQL SSENEKLKKD NETLSCELAR  180
ARKQCDELVA FLRDRLMVGP DQIDRIMRQG SCGSENAVGE GGGGGHCLKL FGVWLKGDTL  240
TDKRNNHKRG REDQMGFGGP RLKESKPVVD FSRNRMMMIN EKGKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-29610225131Heat shock factor protein 1
5d5v_B2e-29610225131Heat shock factor protein 1
5d5v_D2e-29610225131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G056200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963040.0JN896304.1 Glycine max heat shock transcription factor HSFB1 mRNA, complete cds.
GenBankZ469530.0Z46953.1 G.max mRNA for heat shock transcription factor 34.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340381.10.0heat stress transcription factor 25
RefseqXP_028186257.10.0heat shock factor protein HSF24-like
SwissprotP223354e-89HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A445HXF70.0A0A445HXF7_GLYSO; Heat shock factor protein HSF24
TrEMBLI1LHE90.0I1LHE9_SOYBN; Uncharacterized protein
STRINGGLYMA11G06010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.18e-80heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]