PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G053100.2.p
Common NameGLYMA_11G053100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 273aa    MW: 29679.7 Da    PI: 10.7268
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G053100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY32.61.7e-10250269322
                          -SS-EEEEEEE--TT-SS-E CS
                 WRKY   3 DgynWrKYGqKevkgsefpr 22 
                          D y+WrKYGqK++kgs++pr
  Glyma.11G053100.2.p 250 DDYSWRKYGQKPIKGSPHPR 269
                          99*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.1E-16200246IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.3E-10236269IPR003657WRKY domain
PROSITE profilePS5081112.3243272IPR003657WRKY domain
SuperFamilySSF1182904.18E-8245270IPR003657WRKY domain
PfamPF031069.5E-7250270IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAVDLMMGYR NHNFAQENAV REAASGLESV EKLIKLLSQT QQQFQTTSNS TSNSKSSMAN  60
IDTDYRAVAD VAVSKFKKVI SLLGSSRTGH ARFRRAPVAP PPPPAEPRVY RATPVQQIPP  120
PTLHTHAVVT DHSLVPKIER KDSSKTINFS YSNSFVSSLT AGDTDTKQPC SSSPSTAFQI  180
TNLSQVSSGG KPPLSSSSLK RKCSSENLGS AKCGSSSSRC HCSKKSRKMR QKRVVRVPAI  240
SLKMADIPPD DYSWRKYGQK PIKGSPHPRY IA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.548160.0meristem| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G053100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5876990.0KM587699.1 Glycine max clone GmWRKY35 WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348191.10.0WRKY transcription factor 14 isoform 1
RefseqXP_028187139.10.0probable WRKY transcription factor 15 isoform X1
SwissprotQ9STX06e-56WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLI1LHB30.0I1LHB3_SOYBN; Uncharacterized protein
STRINGGLYMA11G05650.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.23e-34WRKY DNA-binding protein 15