 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.11G052100.1.p |
| Common Name | GLYMA_11G052100, Glyma11g05550.1_like1, MYB50 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MYB |
| Protein Properties |
Length: 298aa MW: 32699.1 Da PI: 10.0792 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.11G052100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 63.3 | 4.7e-20 | 5 | 50 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W++eEde l ++v+++G+++W++I++ ++ gR++k+c++rw +
Glyma.11G052100.1.p 5 KGPWSPEEDEALQKLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 50
79******************************.***********985 PP
|
| 2 | Myb_DNA-binding | 52.8 | 9e-17 | 59 | 101 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++
Glyma.11G052100.1.p 59 AFTAEEDDTIIRAHARFGNK-WATIARLLH-GRTDNAIKNHWNST 101
79******************.*********.***********986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0009753 | Biological Process | response to jasmonic acid |
| GO:0010200 | Biological Process | response to chitin |
| GO:0046686 | Biological Process | response to cadmium ion |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MDRIKGPWSP EEDEALQKLV EKHGPRNWSL ISKSIPGRSG KSCRLRWCNQ LSPQVEHRAF 60
TAEEDDTIIR AHARFGNKWA TIARLLHGRT DNAIKNHWNS TLKRKCSSTM IDDNTQPLKR 120
SVSAGAAIPV STGLYMNPPT PGSPSGSDVS ESSLPVASSS HVFRPVPRTV KVLPPVETTS 180
SSNDPPTSLS LSLPGVGVVD SSEVSNRTTE PIHFTPPMPH RSNTMPLLPM MTSVSATVMA 240
PFNFSAEFRS VMQEMIRKEV RSYIELHNQN GMCFQAAVND GFRNASVKRI GISRVDS*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 4e-41 | 4 | 105 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 3e-40 | 4 | 105 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 3e-40 | 4 | 105 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 4e-41 | 4 | 106 | 3 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 4e-41 | 4 | 106 | 3 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.4164 | 0.0 | epicotyl| flower| hypocotyl| leaf| pod| root| seed coat| stem |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT031262 | 0.0 | KT031262.1 Glycine max clone HN_CCL_49 MYB/HD-like transcription factor (Glyma11g05550.1_like1) mRNA, partial cds. |
