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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.11G047300.2.p |
Common Name | GLYMA_11G047300, LOC100796539 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB_related |
Protein Properties |
Length: 299aa MW: 32481.8 Da PI: 10.4409 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.11G047300.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 34.3 | 5.5e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
+++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++
Glyma.11G047300.2.p 5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55
79***********************************9***********99 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006334 | Biological Process | nucleosome assembly |
GO:0031627 | Biological Process | telomeric loop formation |
GO:0000784 | Cellular Component | nuclear chromosome, telomeric region |
GO:0000786 | Cellular Component | nucleosome |
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
GO:0043047 | Molecular Function | single-stranded telomeric DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNLLPSP KIDHNHMALS TVVQRDKEVA DPKPLAVSSG TSPNSKEKTS 120 KLQNFQLDNL ILESIIKLKE PRGSDKAAIA AYIEDQYCST PTLRKLLSTK LKHMVACGKL 180 MKVKHKYRIA TNLTISEKRR CSSLVLLEGR PKDSPKAEKT GVHILSKSEI DAELSKMKGV 240 TPQEAAAAAA KAVAEAEAAI AEAEAAAREA DAAEAEAEAA RVFAKAAMKA LKCKTLRV*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}. |
Functional Description ? help
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Source |
Description |
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC235306 | 0.0 | AC235306.1 Glycine max strain Williams 82 clone GM_WBb0068C17, complete sequence. |