PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 299aa MW: 32481.8 Da PI: 10.4409

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.11G047300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.3	5.5e-11	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Glyma.11G047300.2.p 5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55 79*********************************9*********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.669	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	6.94E-15	2	67	IPR009057	Homeodomain-like
SMART	SM00717	2.9E-5	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-12	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	3.0E-7	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	2.30E-17	6	57	No hit	No description
PROSITE profile	PS51504	20.466	115	191	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	3.97E-15	121	200	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00526	4.1E-10	121	186	IPR005818	Linker histone H1/H5, domain H15
Gene3D	G3DSA:1.10.10.10	1.8E-13	124	191	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00538	2.0E-8	128	184	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0031627	Biological Process	telomeric loop formation
GO:0000784	Cellular Component	nuclear chromosome, telomeric region
GO:0000786	Cellular Component	nucleosome
GO:0003691	Molecular Function	double-stranded telomeric DNA binding
GO:0043047	Molecular Function	single-stranded telomeric DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNLLPSP KIDHNHMALS TVVQRDKEVA DPKPLAVSSG TSPNSKEKTS 120 KLQNFQLDNL ILESIIKLKE PRGSDKAAIA AYIEDQYCST PTLRKLLSTK LKHMVACGKL 180 MKVKHKYRIA TNLTISEKRR CSSLVLLEGR PKDSPKAEKT GVHILSKSEI DAELSKMKGV 240 TPQEAAAAAA KAVAEAEAAI AEAEAAAREA DAAEAEAEAA RVFAKAAMKA LKCKTLRV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28590	0.0	cotyledon

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:15060584}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00626	PBM	Transfer from PK06103.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.11G047300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235306	0.0	AC235306.1 Glycine max strain Williams 82 clone GM_WBb0068C17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006590625.1	0.0	telomere repeat-binding factor 2
Refseq	XP_006590626.1	0.0	telomere repeat-binding factor 2
Refseq	XP_028186273.1	0.0	telomere repeat-binding factor 2-like isoform X2
Swissprot	Q9FJW5	3e-75	TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBL	I1LH56	0.0	I1LH56_SOYBN; Uncharacterized protein
STRING	GLYMA11G05070.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	5e-71	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	Glyma.11G047300.2.p
Entrez Gene	100796539

Publications ? help Back to Top
Lee WK,Cho MH Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana. Nucleic Acids Res., 2016. 44(10): p. 4610-24 [PMID:26857545] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]