PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.11G047300.1.p
Common NameGLYMA_11G047300, LOC100796539
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 299aa    MW: 32481.8 Da    PI: 10.4409
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.11G047300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.5e-11555146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                         +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  Glyma.11G047300.1.p  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55
                         79***********************************9***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.669161IPR017930Myb domain
SuperFamilySSF466896.94E-15267IPR009057Homeodomain-like
SMARTSM007172.9E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-12456IPR009057Homeodomain-like
PfamPF002493.0E-7555IPR001005SANT/Myb domain
CDDcd116602.30E-17657No hitNo description
PROSITE profilePS5150420.466115191IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.97E-15121200IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.1E-10121186IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.8E-13124191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.0E-8128184IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNLLPSP KIDHNHMALS TVVQRDKEVA DPKPLAVSSG TSPNSKEKTS  120
KLQNFQLDNL ILESIIKLKE PRGSDKAAIA AYIEDQYCST PTLRKLLSTK LKHMVACGKL  180
MKVKHKYRIA TNLTISEKRR CSSLVLLEGR PKDSPKAEKT GVHILSKSEI DAELSKMKGV  240
TPQEAAAAAA KAVAEAEAAI AEAEAAAREA DAAEAEAEAA RVFAKAAMKA LKCKTLRV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.285900.0cotyledon
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}.
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.11G047300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353060.0AC235306.1 Glycine max strain Williams 82 clone GM_WBb0068C17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590625.10.0telomere repeat-binding factor 2
RefseqXP_006590626.10.0telomere repeat-binding factor 2
RefseqXP_028186273.10.0telomere repeat-binding factor 2-like isoform X2
SwissprotQ9FJW53e-75TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLI1LH560.0I1LH56_SOYBN; Uncharacterized protein
STRINGGLYMA11G05070.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.35e-71telomere repeat binding factor 1
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]