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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.11G045800.1.p | ||||||||
Common Name | GLYMA_11G045800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 613aa MW: 68684.6 Da PI: 7.4276 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.6 | 4.8e-16 | 276 | 335 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g k ++++lg ++ +e+Aa+a++ a++k++g Glyma.11G045800.1.p 276 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqgrKGRQVYLGGYDMEEKAARAYDMAALKYWG 335 78*******************988885566555*************************98 PP | |||||||
2 | AP2 | 38.4 | 3.2e-12 | 377 | 429 | 3 | 55 |
AP2 3 ykGV...rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV +++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Glyma.11G045800.1.p 377 YRGVtrsHRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 429 99**88888999999****988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.17E-21 | 276 | 343 | No hit | No description |
SuperFamily | SSF54171 | 1.83E-16 | 276 | 345 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.6E-12 | 276 | 335 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-16 | 277 | 344 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-28 | 277 | 349 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.243 | 277 | 343 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 278 | 289 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.89E-23 | 375 | 439 | No hit | No description |
SuperFamily | SSF54171 | 1.77E-15 | 375 | 438 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.94 | 376 | 437 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-17 | 376 | 437 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-30 | 376 | 443 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.2E-7 | 377 | 429 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 419 | 439 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MKPIENGNTV NINYQNSWLG FSLSPQMINI GVPSHLHQTQ PSPAAVETVP PSFYHHTPLH 60 SYGSYYGLEG EHVGLSSSLP IMPLKSNVSL SGIEALSRSQ AQATITTSAM HPRLNNMLYN 120 QLLCHGLNNP NNLNHIQENI SQQQFSYYST LRNHDMILEG SKHQLPCIAE DENPGLKSWF 180 SRDFPARHGE ESRMIVPLED NNGGESGSIG SITYGDLHSL NLSVSPTSGS SCVTSSPAIT 240 NTVATDTKKR GLQMVDQNQK QIGHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK 300 KEGQGRKGRQ VYLGGYDMEE KAARAYDMAA LKYWGPSSHI NFPLENYQNE LEEMKNMTRQ 360 EYVAHLRSGF SRGASMYRGV TRSHRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY 420 DIAAIKFRGV NAVTNFDITR YDVERIMESN NLLSSEQAKR KREMDDGTRS EATVNQKPCT 480 TQETVLMQKR CRSQSEWKMV QYPSSQQLDQ NPQRIECSRT ESLSTALDNM FHHQVEESSN 540 MGTHLSNPSS LVTSLSSSRE ESPDKTSLPM LFGMPSTVSK LLADVDSLDL SSNLRPSLSI 600 PQMPIFAAWT DA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.7488 | 0.0 | epicotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.11G045800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006590617.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
Refseq | XP_028188059.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X1 | ||||
TrEMBL | A0A0R0HIR8 | 0.0 | A0A0R0HIR8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G04910.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-122 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.11G045800.1.p |